View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637_high_10 (Length: 245)
Name: NF5637_high_10
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 26497669 - 26497425
Alignment:
| Q |
1 |
aaattaactagccaactaatcctgttttatttaattaaatcatcaaacaattgcttcctaagaagtaagatttggtccacatggcactggtacaagtgtg |
100 |
Q |
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| T |
26497669 |
aaattaactagccaactaatcctgttttatttaattaaatcatcaaacaattgcttcctaagaagtaagatttggtccacatggcactggtacaagtgtg |
26497570 |
T |
|
| Q |
101 |
agtatattattataatatgtggaatagaaaaatgttaatttgttgttaataagggccaacaacatccattatgtgaattta--------ggcattatgcc |
192 |
Q |
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|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26497569 |
agtatattattataatatgtggtata-aaaaatgttaatttgttgttaataagggccaacaacatccattatgtgaatttaggcattatggcattatgcc |
26497471 |
T |
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| Q |
193 |
tcttgcatggcttagctagaaaatcatcacaattattttcttctca |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26497470 |
tcttgcatggcttagctagaaaatcatcacaattatttttttctca |
26497425 |
T |
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