View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637_high_2 (Length: 624)
Name: NF5637_high_2
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 618
Target Start/End: Original strand, 47394469 - 47395086
Alignment:
| Q |
1 |
agtgatgctgcaaatggatcttgtgttcctacagcttgcattgttccatctggagccggtaaagcaagaatcggtatcgcactcttaccaactcctggta |
100 |
Q |
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| T |
47394469 |
agtgatgctgcaaatggatcttgtgttcctacagcttgcattgttccatctggagccggtaaagcaagaatcggtatcgcactcttaccaactcctggta |
47394568 |
T |
|
| Q |
101 |
atgccacactactagcactcccaccactcacctcagttgtgctcacatgttgtctcacagcaccttgatcatacatcccatttagtacaagtgaatcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47394569 |
atgccacactactagcactcccaccactcacctcagttgtgctcacatgttgtctcacagcaccttgatcatacatcccatttagtataagtgaatcaaa |
47394668 |
T |
|
| Q |
201 |
gccacctcccaaatcagctttctgtttcgacagattactgctagtttccaccaattctcattcccagtcagctttccctatttcagccgctggtgtctcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47394669 |
gccacctcccaaatcagctttctgtttcgacagattactgctagtttccaccaatgctaattcccagtcagctttccctatttcagccgctggtgtctcc |
47394768 |
T |
|
| Q |
301 |
cacactgaagtcactttggatgaaccaaattcttcccacaaaccttctgtcttgacggtcgaagctccagaaaacaatgccaatgcaaatttattgcctt |
400 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47394769 |
cacgctgaagtcactttggatgaaccaaattcttcccacaaaccttctgtcttgacggtcgaagctccagaaaacaatgccaatgcaaatttattgcctt |
47394868 |
T |
|
| Q |
401 |
gttcatcagctgaaacaccatcttctctaaggttcactaattcacctgtctcttgttgaacacgaggattttctttaggctgcagagccacaggaggttg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47394869 |
gttcatcagctgaaacaccatcttctctaaggttcactaattcacctgtctcttgttgaacacgaggagtttctttaggctgcagagccacaggaggttg |
47394968 |
T |
|
| Q |
501 |
ttgcggtcgaggtgttaaattcttcacctcaggcgctggaagagccttcacctcattggcatatgcttctggctcttgttctttcaaagttattacctta |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47394969 |
ttgcggtcgaggtgttaaattcttcacctcaggcgctggaagagccttcacctcattggcatatgcttctggctcttgttctttcaaagttattacctta |
47395068 |
T |
|
| Q |
601 |
acctccaacttcttctca |
618 |
Q |
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|||||||||||||||||| |
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| T |
47395069 |
acctccaacttcttctca |
47395086 |
T |
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