View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637_high_3 (Length: 504)
Name: NF5637_high_3
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 12 - 489
Target Start/End: Complemental strand, 2564220 - 2563730
Alignment:
| Q |
12 |
catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaacta---atgtttagtaaaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2564220 |
catcactatgaatctttgctaagtccttcttcccaccatagaattcctagtaaaattattgagttaattctttctttggaactactaatgtttagtaaaa |
2564121 |
T |
|
| Q |
109 |
gatcattagtttgttatatgtatctgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc |
208 |
Q |
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| T |
2564120 |
gatcattagtttgttatatgtatgtgtaaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcc |
2564021 |
T |
|
| Q |
209 |
tgattccaaccttggttatctgtgatgtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2564020 |
tgattccaaccttggttatctgtgatgtacttcaagtacttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttcat |
2563921 |
T |
|
| Q |
309 |
acacaa----------ccatatataaatgaatgatactaagaagttataattagtttgtaaatattctcttttccacaagctgtaatttcttacttggta |
398 |
Q |
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|||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2563920 |
acacaattcaaaaatcacaaccataaatgaatgatactaagaagttataactagtttgtaaatattctcttttccacaagctgtaatttcttacttggta |
2563821 |
T |
|
| Q |
399 |
accagagtacgagcagtagaatggacaagaatctgtgtaggtgcctctatacttgtcagcaaaatcaaacaactacaaaacatatgttatt |
489 |
Q |
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| T |
2563820 |
accagagtacgagcagtagaatggacaagaacctgtgtaggtgcctctatacttgtcagcaaaatcaaacaactacaaaacatatgttatt |
2563730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 135 - 482
Target Start/End: Complemental strand, 2573944 - 2573586
Alignment:
| Q |
135 |
taaatataaagacctgtgttagtaatgtttgaactccaacaaatttgttatcccagctgaactcagacgctgcctgattccaaccttggttatctgtgat |
234 |
Q |
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||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||| ||| |||||||||||||| |||||| |
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| T |
2573944 |
taaatatgaatacctgtgttagtaatgtttgagctccaacaaatttgttatcccagctaaattcagacactgcttgactccaaccttggttacttgtgat |
2573845 |
T |
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| Q |
235 |
gtacttcaagtatttgctttctccactggccttgtataaccaagcagcagcccataatagttcatccttttggtacacaa--ccatat-------ataaa |
325 |
Q |
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|||| |||||||||||||||| ||||| |||||||||| ||||| |||||||||||||| ||||||||||| ||||||| | | || |||| |
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| T |
2573844 |
gtacgtcaagtatttgctttccccactagccttgtatagccaagtagcagcccataataattcatccttttcatacacaattcaaaatcacagccataag |
2573745 |
T |
|
| Q |
326 |
tgaatgatactaaga---agttataattagtttgtaaatattctcttttccacaagctgtaatttcttacttggtaaccagagtacgagcagtagaatgg |
422 |
Q |
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|||||||| ||| || | | || |||||| | |||| || |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2573744 |
tgaatgat-ctatgaaacattaattattagtcttcaaatgttttcttttttacaagtggtaatttcttacttggtaaccagagtatgagcagtagaatgg |
2573646 |
T |
|
| Q |
423 |
acaagaatctgtgtaggtgcctctatacttgtcagcaaaatcaaacaactacaaaacata |
482 |
Q |
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|||||| | | ||| ||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
2573645 |
gcaagaacccgagtaactgcctctatacttatcagcaaaatcaaacaactgcgaaacata |
2573586 |
T |
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