View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5637_high_7 (Length: 355)
Name: NF5637_high_7
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_high_7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 6041420 - 6041072
Alignment:
| Q |
7 |
gagagaagaatgtgatagttccgggaccaaattgttggagtattcatttccgatatgaaaatggcaggcactacaatgggttttatttttgtcatgcaga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6041420 |
gagagaagaatgtgatagttccgggaccaaattgttggagtattcatttccgatatgaaaatggcaggcactacaatgggttttatttttgtcatgcaga |
6041321 |
T |
|
| Q |
107 |
cgacattaaaggatcaaaatgagtcttcacacataaattaaacaattaagtgtttaaaaactgatatgttaactccttagcaattctcctattgtcacaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6041320 |
caacattaaaggatcaaaatgagtcttcacacataaattaaacaattaagtgtttaaaaactgatatgttaactccttagcaattctcctattgtcacaa |
6041221 |
T |
|
| Q |
207 |
tagtttcaatcaccggaagttgttcaatcaaacatagtatacctccagcaaataccaataccaacataacaagacacaaagcaacacttatattattgga |
306 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
6041220 |
tagtttcaatcaccggaagttgttcaaccaaacatagtatacctccagcaaataccaataccaacataacaagacacaaagcaacacttaaataattgga |
6041121 |
T |
|
| Q |
307 |
atttaacaaaaaagaagataatgtagaagaaaatagaacttacgaatta |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6041120 |
atttaacaaaaaagaagataatgtagaagaaaatagaacttacgaatta |
6041072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University