View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637_low_5 (Length: 368)
Name: NF5637_low_5
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 41150219 - 41149866
Alignment:
| Q |
1 |
aatgaagcagagtccataggcagtgatatcaaattttctattcttagaaaattgaaggaaagaa------tgtactcaaaaattgtgttcttaattattt |
94 |
Q |
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| T |
41150219 |
aatgaagcagagtccataggcagtgatatcaaattt-ctattcttagaaaattgaaggaaagaaaaagtatgtactcaaaaattgtgttcttaattattt |
41150121 |
T |
|
| Q |
95 |
catgtcacacacaatatagaaaaataagcacacctctttttatggatgtgtatttttcaaccacgaaccattatccattatccaatatttatatttctgg |
194 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41150120 |
catgtcacacacaatatagaaaaataagtacacctctttttatggatgtgtatttttcaaccacgaaccattatccattatccaatatttatatttctgg |
41150021 |
T |
|
| Q |
195 |
ttgtactttagcaacacgtaagtactaagaaccacattcttttgtatttttgttacttctcgttgttgttttttgagcttaacaacaagtgggatagcat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41150020 |
ttgtactttagcaacacgtaagtactaagaaccacattcttttgtatttttgttacttctcgttgttgttttttgagcttaacaacaagtgggatagcat |
41149921 |
T |
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| Q |
295 |
ggaagtttgtcatctcagattgcgtatgatttggattaatcttgttgggtcatga |
349 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41149920 |
ggaagtttgtcatctcagattgtgtatgatttggattaatcttgttgggtcatga |
41149866 |
T |
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