View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5637_low_6 (Length: 364)

Name: NF5637_low_6
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5637_low_6
NF5637_low_6
[»] chr1 (3 HSPs)
chr1 (1-352)||(35913510-35913861)
chr1 (26-86)||(12398141-12398201)
chr1 (26-86)||(31584029-31584089)
[»] chr4 (2 HSPs)
chr4 (1-87)||(23222047-23222133)
chr4 (46-86)||(4745944-4745984)
[»] chr2 (2 HSPs)
chr2 (1-115)||(17157389-17157507)
chr2 (46-87)||(27765315-27765356)
[»] chr5 (1 HSPs)
chr5 (26-86)||(17246636-17246696)
[»] chr3 (2 HSPs)
chr3 (26-86)||(9796548-9796608)
chr3 (26-86)||(20311362-20311422)
[»] chr7 (2 HSPs)
chr7 (26-89)||(4031200-4031263)
chr7 (29-89)||(12341682-12341742)
[»] chr6 (1 HSPs)
chr6 (18-87)||(8061431-8061500)
[»] chr8 (2 HSPs)
chr8 (26-86)||(12863784-12863844)
chr8 (26-86)||(28890670-28890730)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 35913861 - 35913510
Alignment:
Q  1 aaatgatcaactgcatgtattttcttgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaatttaaaggttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35913861 aaatgatcaactgcatgtattttcttgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcgtcaaaatttaaaggttgttg 35913762  T
Q  101 ttctttaacccattttagtctaacgtctttaacctgacagattggacaaatgaagattacttttaaacctcattcctttaatgtagatataaaggattta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||     
T  35913761 ttctttaacccattttagtctaacgtctttaacctgacagattgaacaaatgaagattacttttaaacctcggtcctttaatgtagatataaaggatttg 35913662  T
Q  201 ctctccaatgtttaaccattcttattcaagatttgttcatttgtgtgttcgttcattcttgcgtatgcaacatctcctaagtgtggttgtatcgaagagg 300  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35913661 ctcttcaatgtttaaccattcttattcaagatttgttcatttgtgtgttcgttcattcttgcgtatgcaacatctcctaagtatggttgtatcgaagagg 35913562  T
Q  301 gagttacttccagtagagtatgctaaaaaatgtgtaagtgtccttccgccta 352  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  35913561 gagttacttccagtagagtatgctaaaaaatttgtaagtggccttccgccta 35913510  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 12398141 - 12398201
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||| |||| | || | ||||| ||||||||||  |||||||||||||||||||||    
T  12398141 tgcacacttgaacatatattagcatattcaattattcttcaatactttattatcatcaaaa 12398201  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 31584089 - 31584029
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||||| ||   || ||||||||||||||||||  |||||||| ||||||||||||    
T  31584089 tgcacacttaagcacgtattaacatatccaattattcttcaatactttgttatcatcaaaa 31584029  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 23222047 - 23222133
Alignment:
Q  1 aaatgatcaactgcatgtattttcttgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaat 87  Q
    |||||||||||||| ||||||||  | |||| ||||||||||||||   |||||||||||| | ||||||||| ||||||| |||||    
T  23222047 aaatgatcaactgcgtgtatttttctacacatttaaacaaacatcatagtatccaattatttttaaatactttgttatcatgaaaat 23222133  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 4745984 - 4745944
Alignment:
Q  46 aacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||||||||||||  |||| ||||||||||||||||    
T  4745984 aacatatccaattattcttcaataatttattatcatcaaaa 4745944  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 17157389 - 17157507
Alignment:
Q  1 aaatgatcaactgcatgtattttcttgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaatttaaaggtt---- 96  Q
    |||||||||||| | | || || |||||||||||||||||||| ||   |||| |||| |||| ||| ||||| |||||||||||| |||||||||        
T  17157389 aaatgatcaactacgtatagttccttgcacacttaaacaaacaccatagtatcaaattgttctaaaacactttcttatcatcaaaacttaaaggttatta 17157488  T
Q  97 gttgttctttaacccattt 115  Q
     ||||||||||||||||||    
T  17157489 attgttctttaacccattt 17157507  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 27765356 - 27765315
Alignment:
Q  46 aacatatccaattattctcaaatactttattatcatcaaaat 87  Q
    ||||||||||||||||||  |||||||| |||||||||||||    
T  27765356 aacatatccaattattctttaatactttgttatcatcaaaat 27765315  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 17246636 - 17246696
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||| ||||||||||||||||| ||||| | ||  |||| ||||||||||||||||    
T  17246636 tgcacacttgaacaaacatcaacatattcaattgtcctttaatagtttattatcatcaaaa 17246696  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 9796548 - 9796608
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||| |||| | || ||||||||||||| ||||  |||||||||||||||||||||    
T  9796548 tgcacacttgaacatatattaacatatccaattgttctttaatactttattatcatcaaaa 9796608  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 20311422 - 20311362
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    ||||||||| |||| | || | ||||||||||| |||| ||||||||| ||||||||||||    
T  20311422 tgcacacttgaacatatattagcatatccaattgttcttaaatactttgttatcatcaaaa 20311362  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 4031263 - 4031200
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaattt 89  Q
    ||||||||| |||| | || |||| ||| |||||||||  ||||||||||||||||||||||||    
T  4031263 tgcacacttgaacatatattaacacatctaattattctttaatactttattatcatcaaaattt 4031200  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 12341682 - 12341742
Alignment:
Q  29 acacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaattt 89  Q
    ||||||||||| | || ||||||| ||||| ||||  |||||||| |||||||||||||||    
T  12341682 acacttaaacatatattaacatattcaatttttctttaatactttgttatcatcaaaattt 12341742  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 8061431 - 8061500
Alignment:
Q  18 tattttcttgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaat 87  Q
    ||||||| |||||| ||||||||| ||||   |||||||||||| |||||| |||| ||| |||||||||    
T  8061431 tattttcctgcacatttaaacaaatatcagagtatccaattattttcaaatgctttgttaacatcaaaat 8061500  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 12863784 - 12863844
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    |||||||||||||| | || ||||||||||||| || |  |||||||| ||||||||||||    
T  12863784 tgcacacttaaacacatattaacatatccaattgttgttcaatactttgttatcatcaaaa 12863844  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 28890670 - 28890730
Alignment:
Q  26 tgcacacttaaacaaacatcaacatatccaattattctcaaatactttattatcatcaaaa 86  Q
    |||||||||||| | | || | ||||||||||||||||  |||||||| ||||||||||||    
T  28890670 tgcacacttaaatatatattagcatatccaattattctttaatactttgttatcatcaaaa 28890730  T

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