View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5637_low_8 (Length: 348)
Name: NF5637_low_8
Description: NF5637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5637_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 36675786 - 36676105
Alignment:
| Q |
18 |
gatggagaggaaaatggagttcatgttcacttttttaatatatgtgggggagacatattatacatatatttgaccaataacaggcttannnnnnnattat |
117 |
Q |
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| T |
36675786 |
gatggagaggaaaatggagttcatgttcaattttttaatatatgtgggggagacatattatacatatatttgaccaataacaggcttatttttt-attat |
36675884 |
T |
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| Q |
118 |
caggagagcattacaactttttatcacaatgttactgagactaacattacttttttccgacataaacccgatctaattatttaaaactcgacaatttcgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675885 |
caggagagcattacaactttttatcacaatgttactgagactaacattacttttttcagacataaacccgatctaattatttaaaactcgacaatttcgt |
36675984 |
T |
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| Q |
218 |
ccataggaatagaagaagcatattctaatccccttaatgggtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675985 |
ccataggaatagaagaagcatattctaatccccttaatgtgtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaac |
36676084 |
T |
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| Q |
318 |
ttcaagcattgttggcctttg |
338 |
Q |
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| T |
36676085 |
ttcaagcattgttggcctttg |
36676105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 187 - 338
Target Start/End: Original strand, 36673200 - 36673350
Alignment:
| Q |
187 |
gatctaattatttaaaactcgacaatttcgtccataggaatagaagaagcatattctaatccccttaatgggtcagaatcatcaccagaaccatttggtc |
286 |
Q |
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| T |
36673200 |
gatcttattatttaaa-ctcaacaatttcgtctatagtaattgaagtagcatattctaatccccttaatctgtcagaattattaacagagctattttgtc |
36673298 |
T |
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| Q |
287 |
ccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcctttg |
338 |
Q |
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| T |
36673299 |
ccttccttacattgctcatattgttgtaaacttcaagcattgttggcctttg |
36673350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 235 - 338
Target Start/End: Original strand, 36695531 - 36695634
Alignment:
| Q |
235 |
gcatattctaatccccttaatgggtcagaatcatcaccagaaccatttggtcccttcctaacgttcctcatattgttgtaaacttcaagcattgttggcc |
334 |
Q |
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|||||||| ||||||||||||| |||||||||||||||| ||||||||||| |||||| | || ||||||||||||||||||||||||||||||| || |
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| T |
36695531 |
gcatattcaaatccccttaatgtgtcagaatcatcaccataaccatttggtggcttcctgtcattgctcatattgttgtaaacttcaagcattgttgacc |
36695630 |
T |
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| Q |
335 |
tttg |
338 |
Q |
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|||| |
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| T |
36695631 |
tttg |
36695634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 36695413 - 36695471
Alignment:
| Q |
31 |
atggagttcatgttcacttttttaatatat-----gtgggggagacatattatacatat |
84 |
Q |
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| T |
36695413 |
atggagttcatgttcacttttttaatatatgtggcgtgggggagacgtattatacatat |
36695471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 36673012 - 36673069
Alignment:
| Q |
42 |
gttcacttttttaatatatgtgggggagacatattatacatatatttgaccaataaca |
99 |
Q |
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| T |
36673012 |
gttcattttcttaatacatgttggggagatatattatacatatatttgagcaataaca |
36673069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 36683744 - 36683781
Alignment:
| Q |
301 |
ctcatattgttgtaaacttcaagcattgttggcctttg |
338 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |
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| T |
36683744 |
ctcaaattgttgtaaacttcaagcattgttggtctttg |
36683781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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