View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5639-Insertion-1 (Length: 291)

Name: NF5639-Insertion-1
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5639-Insertion-1
NF5639-Insertion-1
[»] scaffold0317 (2 HSPs)
scaffold0317 (133-288)||(19145-19313)
scaffold0317 (8-126)||(18964-19082)
[»] scaffold0515 (2 HSPs)
scaffold0515 (8-126)||(125-243)
scaffold0515 (133-194)||(1-62)
[»] scaffold0306 (2 HSPs)
scaffold0306 (8-126)||(127-245)
scaffold0306 (133-196)||(1-64)
[»] chr5 (2 HSPs)
chr5 (213-261)||(21156854-21156902)
chr5 (218-261)||(39481168-39481211)
[»] chr4 (1 HSPs)
chr4 (213-261)||(4117549-4117597)
[»] chr1 (1 HSPs)
chr1 (213-261)||(47933936-47933984)
[»] chr8 (1 HSPs)
chr8 (217-261)||(30849786-30849830)


Alignment Details
Target: scaffold0317 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 133 - 288
Target Start/End: Original strand, 19145 - 19313
Alignment:
Q  133 cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagacctcaccgtcgtcattacc-------------atctgaa 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||             |||||||    
T  19145 cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagacctcaccgccgtcattaccatcctcacctcaaatctgaa 19244  T
Q  220 caccattaacgtcatctatcaccatctcatctcaccgtcaccgcggtgctcaccctctttcgcattcat 288  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19245 caccattaacgtcatctatcaccatctcatctcaccgtcaccgccgtgctcaccctctttcgcattcat 19313  T

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Target: scaffold0317; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 18964 - 19082
Alignment:
Q  8 ctttttagtcattacagttttgcaacatgaaaatgaaatcagacttaaaatcaaacctcaaaacagtccagcagctgtcgagacattgaataggagcaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18964 ctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtccagcagctgtccagacattgaataggagcaga 19063  T
Q  108 aaatccatcttaagtgaag 126  Q
    |||||||||||||| ||||    
T  19064 aaatccatcttaagcgaag 19082  T

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Target: scaffold0515 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 243 - 125
Alignment:
Q  8 ctttttagtcattacagttttgcaacatgaaaatgaaatcagacttaaaatcaaacctcaaaacagtccagcagctgtcgagacattgaataggagcaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  243 ctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtccagcagctgtccagacattgaataggagcaga 144  T
Q  108 aaatccatcttaagtgaag 126  Q
    |||||||||||||| ||||    
T  143 aaatccatcttaagcgaag 125  T

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Target: scaffold0515; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 194
Target Start/End: Complemental strand, 62 - 1
Alignment:
Q  133 cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagac 194  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  62 cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagac 1  T

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Target: scaffold0306 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 245 - 127
Alignment:
Q  8 ctttttagtcattacagttttgcaacatgaaaatgaaatcagacttaaaatcaaacctcaaaacagtccagcagctgtcgagacattgaataggagcaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  245 ctttttagtcattacagttttgcaacatgaaaatgaaatcaaacttaaaatcaaacctcaaaacagtccagcagctgtccagacattgaataggagcaga 146  T
Q  108 aaatccatcttaagtgaag 126  Q
    |||||||||||||| ||||    
T  145 aaatccatcttaagcgaag 127  T

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Target: scaffold0306; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 64 - 1
Alignment:
Q  133 cccatttatatttatggagaggaagatgattcagaggacatcatggcttcccgtcctcagacct 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  64 cccatttatatttatggagaggaagacgattcagaggacatcatggcttcccgtcctcagacct 1  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 21156854 - 21156902
Alignment:
Q  213 atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 261  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  21156854 atctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc 21156902  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 39481211 - 39481168
Alignment:
Q  218 aacaccattaacgtcatctatcaccatctcatctcaccgtcacc 261  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  39481211 aacactattaacgtcatctatcaccatctcatctcaccgtcacc 39481168  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 4117549 - 4117597
Alignment:
Q  213 atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 261  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  4117549 atctgaacgccattaacgtcatctatcaccatatcatctcaccgtcacc 4117597  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 47933984 - 47933936
Alignment:
Q  213 atctgaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 261  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  47933984 atctgaacaccattaacgtcgtctattaccatctcatctcaccgtcacc 47933936  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 30849786 - 30849830
Alignment:
Q  217 gaacaccattaacgtcatctatcaccatctcatctcaccgtcacc 261  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  30849786 gaacaccattaacatcatctattaccatctcatctcaccgtcacc 30849830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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