View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5639-Insertion-2 (Length: 1117)
Name: NF5639-Insertion-2
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639-Insertion-2 |
 | |
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| [»] scaffold0182 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 319 - 975
Target Start/End: Original strand, 22017019 - 22017680
Alignment:
| Q |
319 |
cttctatgagaatgcctaagtagttggatttaatatcataagtttgtggtgtcnnnnnnnattatcacatgcgtgtaagtgttggaggttgttgcttaac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22017019 |
cttctatgagaatgcctaagtagttggatttaatctcataagtctgtggtgtctttttttattatcacatgcgtgtaagtgttggaggttgttgcttaac |
22017118 |
T |
|
| Q |
419 |
cgctttgtgaaaagatagcaatggaattgtagcttcaaattggtataaacttggagagtgggaagagaatcaaatcaaatctaatctaatgagagaagag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22017119 |
cgctttgtgaaaagatagcaatggaattgtagcttcaaattggtataaacttggagagtgggaagagaatcaaatcaaatataatctaatgagagaagag |
22017218 |
T |
|
| Q |
519 |
tacaaatgttaattaaatagtagaataattttcnnnnnnnaggttaatcaaattaagtaattataaagtattagtatatgttaaaatgggcatatactag |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22017219 |
tacaaatgttaattaaatagtagaataattttctttttttaggttaatcaaattaagtaattataaagtattagtatatgttaaaatgggcatatactag |
22017318 |
T |
|
| Q |
619 |
acatcagacaatatgtgttatagcatgatagaggtatatgtttatctctttattttttcttttaaaaagtttaacgatgaaaatagaatattcaaattca |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22017319 |
acatcagacaatatgtgttatagcatgatagaggtatatgtttatctctttattttttcttttaaaaagtttaacgatgaaaatagaatattcaaattca |
22017418 |
T |
|
| Q |
719 |
cgcctaaacacattaaatgtctatgcacaatcaataagttgtacttacctgatacgagtctcttctaacttaatcaaagttttgggttcaaatctagcct |
818 |
Q |
| |
|
|| ||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| || || |
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|
| T |
22017419 |
cgtctaaacatataaaatgtctatgcacaaccaataagttgtacttac---atacgagtctcttctaacttaatcaaaattttggattcaaatccagtct |
22017515 |
T |
|
| Q |
819 |
tgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaatcacacaatgat----cgattaatctctgcagttgtgcac-aaagata |
913 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| ||||||| |
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|
| T |
22017516 |
tgagtatgtagcagtgttaaaacccttagggaaagcttgccgcctatttgaatcacacaatgatcgagcgattaatctctacagttgcgcacaaaagata |
22017615 |
T |
|
| Q |
914 |
cgtgatttataccc--aaaaaccattaagttgtgac-atacatgttagcatctatatttatttct |
975 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
22017616 |
cgtgatttatacccaaaaaaaccattaagttgtgacaatacatgtttgcatctatatttatttct |
22017680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 22016714 - 22016927
Alignment:
| Q |
8 |
ataaacaccaagaaaccaaagtaaaacaaaaacaatttgtgtccctctcattatctttttaaggtttaggaacaaactaaaccgatacaatgaagaaatg |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
22016714 |
ataaacaccaagaaaccaaagcaaaacaaaaacaatttgtgtccctctcattatctttttaaggtttaggaacaaactaaaccaatacaatgaagaa-tg |
22016812 |
T |
|
| Q |
108 |
attccttctttgttcttggtacttgtatttaaaggccaagttatgtgtttatgacacacttatcttgaagtaaatgcaataacaatgactttgagtttgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22016813 |
attccttctttgttcttggtacttgtatttaaaggccaagttatgtgtttatgacacacttatcttgaagtaaatgcaataacaatgactttgagtttgg |
22016912 |
T |
|
| Q |
208 |
aatacagttcacaag |
222 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
22016913 |
aatacagttcacaag |
22016927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 885
Target Start/End: Complemental strand, 31307198 - 31307089
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaatcaca |
875 |
Q |
| |
|
|||||||||| ||||| ||| || ||||||| |||| ||||||| | ||| | ||||||||||| |||||||| ||| ||||||| ||||| || || |
|
|
| T |
31307198 |
gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccca |
31307099 |
T |
|
| Q |
876 |
caatgatcga |
885 |
Q |
| |
|
||||| |||| |
|
|
| T |
31307098 |
caatgctcga |
31307089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 868
Target Start/End: Original strand, 28537399 - 28537491
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttg |
868 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||||| | ||| |||| ||||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
28537399 |
gtctcttctaacttaatcaaggttttgggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagagcctgccgcccatttg |
28537491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 776 - 860
Target Start/End: Complemental strand, 19477381 - 19477297
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccg |
860 |
Q |
| |
|
|||||||||| ||||| ||| ||| |||||| |||| ||||||| | ||| ||||||||||||| |||||||| ||||||||| |
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|
| T |
19477381 |
gtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagagcttgccg |
19477297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 772 - 879
Target Start/End: Original strand, 40294617 - 40294724
Alignment:
| Q |
772 |
acgagtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaat |
871 |
Q |
| |
|
||||||||| |||| ||||||||| || || |||| |||| ||||||| |||| |||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
40294617 |
acgagtctcctctaccttaatcaaggtcctgagttcgaatccagccttggatatgcaacaatgttaaaactcttagggaaagcttgccgctcatttgaat |
40294716 |
T |
|
| Q |
872 |
cacacaat |
879 |
Q |
| |
|
| |||||| |
|
|
| T |
40294717 |
cccacaat |
40294724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 776 - 867
Target Start/End: Complemental strand, 48211092 - 48211001
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctattt |
867 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||| ||||||||| ||| | || ||||||| |||| ||| ||||||||| |||||| |
|
|
| T |
48211092 |
gtctcttctaacttaatcaaggtttttggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctattt |
48211001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 857
Target Start/End: Complemental strand, 48204447 - 48204362
Alignment:
| Q |
772 |
acgagtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttg |
857 |
Q |
| |
|
|||||||||||||| ||||| ||| || |||||||| |||| ||||||| | ||| | || ||||||| ||||||||| |||||| |
|
|
| T |
48204447 |
acgagtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagagcttg |
48204362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 768 - 820
Target Start/End: Original strand, 40019242 - 40019294
Alignment:
| Q |
768 |
tgatacgagtctcttctaacttaatcaaagttttgggttcaaatctagccttg |
820 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
40019242 |
tgatacgagtctcttctaacttaatcaaggttttgggttcgaattcagccttg |
40019294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 781 - 930
Target Start/End: Original strand, 46864105 - 46864259
Alignment:
| Q |
781 |
ttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaatcacacaatg |
880 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| ||| | ||| | || |||||||| |||||||| | ||||||| | ||||| | ||||||| |
|
|
| T |
46864105 |
ttctagcttaatcaaagttttgggttcaaatccagctttgggcatgcagtagcgttaaaattcttagggagaacttgccgtccatttgggtttcacaatg |
46864204 |
T |
|
| Q |
881 |
atc----gattaatctctgcagttgtgcacaaa-gatacgtgatttatacccaaa |
930 |
Q |
| |
|
|| ||||| |||||||||||| || |||| ||||| ||||||| ||||||| |
|
|
| T |
46864205 |
ttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacccaaa |
46864259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 776 - 859
Target Start/End: Original strand, 10841026 - 10841109
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgcc |
859 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||||| ||||||| | |||||||| |||||||| |||||||| | |||||| |
|
|
| T |
10841026 |
gtctcttctatcttaaccaagattttgggttcaaattcagccttgggcatgtaacaacgttaaaattcttagggagaacttgcc |
10841109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 776 - 885
Target Start/End: Complemental strand, 31579361 - 31579252
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaatcaca |
875 |
Q |
| |
|
|||||||||| ||||||||| || |||||||| |||| ||||||| | ||| ||||||||||||| ||||||| || ||||||| |||| | || || |
|
|
| T |
31579361 |
gtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagtctgccgcccatttaagtccca |
31579262 |
T |
|
| Q |
876 |
caatgatcga |
885 |
Q |
| |
|
||||| |||| |
|
|
| T |
31579261 |
caatgctcga |
31579252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 772 - 879
Target Start/End: Complemental strand, 18105498 - 18105391
Alignment:
| Q |
772 |
acgagtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaat |
871 |
Q |
| |
|
|||||||||||||| ||||| ||| || ||||||| |||| ||||||| | ||| |||| |||||||| |||| ||| ||| ||||||| |||||| | |
|
|
| T |
18105498 |
acgagtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagagcctgccgcccatttgagt |
18105399 |
T |
|
| Q |
872 |
cacacaat |
879 |
Q |
| |
|
| |||||| |
|
|
| T |
18105398 |
ctcacaat |
18105391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 885
Target Start/End: Original strand, 26340 - 26449
Alignment:
| Q |
776 |
gtctcttctaacttaatcaaagttttgggttcaaatctagccttgagtatgtaacagtgttaaaatccttagggaaagcttgccgcctatttgaatcaca |
875 |
Q |
| |
|
|||||||||| ||||| ||| || ||||||| |||| ||||||| | ||| | ||||||||||| |||||||| ||| ||||||| ||||| || || |
|
|
| T |
26340 |
gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagcctgccgcccatttgggtccca |
26439 |
T |
|
| Q |
876 |
caatgatcga |
885 |
Q |
| |
|
||||| |||| |
|
|
| T |
26440 |
caatgttcga |
26449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 774 - 807
Target Start/End: Complemental strand, 2968329 - 2968296
Alignment:
| Q |
774 |
gagtctcttctaacttaatcaaagttttgggttc |
807 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
2968329 |
gagtctcttctaacttaatcgaagttttgggttc |
2968296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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