View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5639-Insertion-3 (Length: 1015)

Name: NF5639-Insertion-3
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5639-Insertion-3
NF5639-Insertion-3
[»] chr3 (12 HSPs)
chr3 (6-873)||(37387008-37387879)
chr3 (384-453)||(26043657-26043726)
chr3 (887-940)||(37387872-37387925)
chr3 (380-497)||(15020087-15020205)
chr3 (386-450)||(3475694-3475758)
chr3 (405-515)||(24355438-24355548)
chr3 (469-507)||(38773656-38773694)
chr3 (384-454)||(40425909-40425979)
chr3 (469-503)||(45054770-45054804)
chr3 (469-506)||(37238758-37238795)
chr3 (404-437)||(43409889-43409922)
chr3 (469-506)||(51980684-51980721)
[»] chr1 (8 HSPs)
chr1 (380-484)||(31565198-31565302)
chr1 (395-510)||(32441603-32441718)
chr1 (623-669)||(48382328-48382374)
chr1 (404-453)||(48622239-48622288)
chr1 (468-506)||(3491405-3491443)
chr1 (384-454)||(37050714-37050784)
chr1 (224-301)||(3824808-3824885)
chr1 (469-506)||(48217527-48217564)
[»] chr7 (10 HSPs)
chr7 (631-692)||(31169245-31169306)
chr7 (381-453)||(10701859-10701930)
chr7 (641-695)||(23575221-23575275)
chr7 (469-506)||(25119873-25119910)
chr7 (536-676)||(31150972-31151115)
chr7 (469-508)||(11667128-11667167)
chr7 (468-506)||(21148534-21148572)
chr7 (626-695)||(45685556-45685626)
chr7 (476-505)||(20011355-20011384)
chr7 (468-505)||(38073565-38073602)
[»] chr4 (8 HSPs)
chr4 (407-504)||(24887885-24887982)
chr4 (468-508)||(20574846-20574886)
chr4 (469-505)||(22019523-22019559)
chr4 (389-514)||(49026019-49026144)
chr4 (469-506)||(28675675-28675712)
chr4 (469-506)||(29508798-29508835)
chr4 (476-505)||(30666983-30667012)
chr4 (469-506)||(50297627-50297664)
[»] chr2 (6 HSPs)
chr2 (624-672)||(39533103-39533151)
chr2 (469-512)||(39364556-39364599)
chr2 (469-506)||(410032-410069)
chr2 (469-510)||(15079962-15080003)
chr2 (469-504)||(44068774-44068809)
chr2 (469-502)||(25626607-25626640)
[»] chr8 (4 HSPs)
chr8 (469-512)||(8114288-8114331)
chr8 (624-695)||(37043789-37043860)
chr8 (468-506)||(11257999-11258037)
chr8 (469-506)||(5494014-5494051)
[»] chr5 (7 HSPs)
chr5 (476-509)||(36491905-36491938)
chr5 (469-509)||(12289134-12289174)
chr5 (643-695)||(19017926-19017978)
chr5 (629-669)||(31336297-31336337)
chr5 (467-510)||(10431552-10431595)
chr5 (624-671)||(34842816-34842863)
chr5 (469-506)||(34178230-34178267)
[»] chr6 (1 HSPs)
chr6 (469-506)||(7509632-7509669)


Alignment Details
Target: chr3 (Bit Score: 614; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 6 - 873
Target Start/End: Original strand, 37387008 - 37387879
Alignment:
Q  6 caagaatttgtactctttaaatttattgatgtatcaataaatatttcacgccatttattgtataactatacctttcctacaattttttgagaagttttat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37387008 caagaatttgtactctttaaatttattgatgtatcaataaatatttcacgccatttattgtataactatacctttcctacaattttttgagaagttttat 37387107  T
Q  106 gaataattaacagagaaaaatacatataattataaaataaacaacaaaaatatgattgggttgagaatagatatcggatcgggtgttctagttcagctat 205  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||     ||||||||||||||||||    
T  37387108 gaataattaacagagaaaaata--tataattataaaataaacaacaaaaatatgattgggttgagaattgatatcgg-----gtgttctagttcagctat 37387200  T
Q  206 agt--------tatgggaccttgtctagtgacggatccatgaattttgaatagtgaaggcactttatatggacaacttatatgtaaatttgtaacacctg 297  Q
    |||        ||||| |||||||| ||| || |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |    
T  37387201 agtactggaactatggaaccttgtccagtaacagatccatgaattttgaatagtggaggcactttatatggacatcttatatgtaaatttgtaacgcccg 37387300  T
Q  298 tgaatattt--taattagtatggacattgtttattcaatttaaactatgtcctacgtatggcacatgttaagatatcnnnnnnntaatttttgtattgga 395  Q
    ||||||| |  ||||||||| ||| ||||||||| |||||| ||||||||| ||||| ||||||||||||||||| |       ||||||||||||||||    
T  37387301 tgaatatatcttaattagtagggagattgtttatccaatttgaactatgtcgtacgtgtggcacatgttaagataccaaaaaaataatttttgtattgga 37387400  T
Q  396 aattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnn-ggaaactttaacacgtgcccttagggcacaagt 494  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||        ||||||||||||| |||||||||||||||||||    
T  37387401 aattgcaccaatttatttttcaaaagattgaaatttaattttcctcgattaatactttcgtttttttggaaactttaacatgtgcccttagggcacaagt 37387500  T
Q  495 taacatgaccctaaaagaaattagattccaaggtcaacaaaaaatcctaatttttgcccatttttcaagacacttaaaccgacaatgaatcctaaaaata 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  37387501 taacatgaccctaaaagaaattagattccaaggtcaacaaaaaatcctaatttctacccatttttcaagtcacttaaaccgacaatgaatcctaaaaata 37387600  T
Q  595 accaagagaaaaagttttttgatatatcttaatgagatctcaccatccaaggtgtttgtgaagtgtttcccaacccatgaattccacccaaagacactca 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37387601 accaagagaaaaagttttttgatatatcttaatgagatctcaccatcgaaggtgtttgtgaagtgtttcccaacccaagaattccacccaaagacactca 37387700  T
Q  695 atctcaagattttctaaagtcccctccttcgattttacaagattgctcataaaatgtcgaactgaagcttatacgttgtccatattgagacgaaatcgcg 794  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||    
T  37387701 atctcaaggttttctaaagtcccctcctttgattttacaggattgctcataaaatgttgaactgaagtttatacgttgtccatattgagacaaaatcgcg 37387800  T
Q  795 ttacgatttgtctgaatcactactcgatttgcaattcgtacattgtactattggtagcagtaggtaaaattgtgccaca 873  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  37387801 ttacgatttgtctaaatcactactcgatttgcaattcgtacattgtactattggtagcagtaggcaaaaccgtgccaca 37387879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 384 - 453
Target Start/End: Original strand, 26043657 - 26043726
Alignment:
Q  384 ttttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatacttt 453  Q
    |||||| ||||||||||||||||||||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  26043657 ttttgttttggaaattgcaccaatttatttcataaaagattgaaatttaattttcttcaataaatacttt 26043726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 887 - 940
Target Start/End: Original strand, 37387872 - 37387925
Alignment:
Q  887 gtgccacagtttttgacaaaccaaaaacatgaaaaacaatgacatctaatcgtg 940  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  37387872 gtgccacagtttttgacgaaccaaaaacatgaaaaacaacgacatctaatcgtg 37387925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 380 - 497
Target Start/End: Complemental strand, 15020205 - 15020087
Alignment:
Q  380 taatttttgtattggaaattgcaccaatttatttctc-aaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtg 478  Q
    ||||||||  |||| ||||||||||||||||||| |  |||| ||||||||||||||||| ||||| |||||||||       |||||||||||||  ||    
T  15020205 taatttttacattgaaaattgcaccaatttatttttttaaaagattgaaatttaattttcttcaataaatactttcttattttggaaactttaacatttg 15020106  T
Q  479 cccttagggcacaagttaa 497  Q
     |||||||  |||||||||    
T  15020105 tccttaggatacaagttaa 15020087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 3475758 - 3475694
Alignment:
Q  386 ttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatac 450  Q
    ||||||||||||||||||||||||||| ||  ||| |||||||||||||||| || ||| |||||    
T  3475758 ttgtattggaaattgcaccaatttattactataaagattgaaatttaatttttcttaataaatac 3475694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 515
Target Start/End: Complemental strand, 24355548 - 24355438
Alignment:
Q  405 aatttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtgcccttagggcacaagttaacatgacc 504  Q
    |||||| |||||| || ||||||||||||| || |||||| ||||||| |        ||||  |||||| ||||| | |||||||||||||||||||||    
T  24355548 aatttacttctcacaagattgaaatttaatgtttctcaataaatacttgctctttgtagaaagcttaacatgtgccttaagggcacaagttaacatgacc 24355449  T
Q  505 ctaaaagaaat 515  Q
    |||||| ||||    
T  24355448 ctaaaacaaat 24355438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 38773656 - 38773694
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgacccta 507  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  38773656 ttaacatgtgccctaagggcacaagttaacatgacccta 38773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 40425909 - 40425979
Alignment:
Q  384 ttttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttc 454  Q
    ||||||||||||||||||| ||||||| || | | || |||| |||||||||||| ||||| |||| ||||    
T  40425909 ttttgtattggaaattgcatcaatttaatttttagaagattggaatttaattttcttcaataaatattttc 40425979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 45054770 - 45054804
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgac 503  Q
    |||||| ||||||||||||||||||||||||||||    
T  45054770 ttaacatgtgcccttagggcacaagttaacatgac 45054804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 37238795 - 37238758
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  37238795 ttaacatgtgccctaagggcacaagttaacatgaccct 37238758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 404 - 437
Target Start/End: Original strand, 43409889 - 43409922
Alignment:
Q  404 caatttatttctcaaaatattgaaatttaatttt 437  Q
    ||||||||||| ||||||||||||||||||||||    
T  43409889 caatttatttcacaaaatattgaaatttaatttt 43409922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 51980721 - 51980684
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  51980721 ttaacatgtgccctaagggcacaagttaacatgaccct 51980684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 3e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 380 - 484
Target Start/End: Original strand, 31565198 - 31565302
Alignment:
Q  380 taatttttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtgc 479  Q
    ||||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||       |||||| |||||| ||||    
T  31565198 taatttttgcattagaaattgcaccaatttatttctgaaaagattgaaatttaattttcctcaataaataccttctttctttggaaaccttaacatgtgc 31565297  T
Q  480 cctta 484  Q
    |||||    
T  31565298 cctta 31565302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 395 - 510
Target Start/End: Complemental strand, 32441718 - 32441603
Alignment:
Q  395 aaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtgcccttagggcacaagt 494  Q
    |||||| |||||||||||||||| |  ||| |||||||||  | |||||| ||||||| |       |||||| |||||| ||||||| |||||||||||    
T  32441718 aaattgtaccaatttatttctcataggattaaaatttaatgcttctcaataaatacttactctttgtggaaaccttaacatgtgccctaagggcacaagt 32441619  T
Q  495 taacatgaccctaaaa 510  Q
    ||||| ||||||||||    
T  32441618 taacaagaccctaaaa 32441603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 623 - 669
Target Start/End: Complemental strand, 48382374 - 48382328
Alignment:
Q  623 ttaatgagatctcaccatccaaggtgtttgtgaagtgtttcccaacc 669  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||    
T  48382374 ttaatgagatctcactacccaaggtgtttgtgaagtgtttccaaacc 48382328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 453
Target Start/End: Complemental strand, 48622288 - 48622239
Alignment:
Q  404 caatttatttctcaaaatattgaaatttaattttcctcaattaatacttt 453  Q
    ||||||||||  ||||| |||||||||||||||| |||||||||||||||    
T  48622288 caatttattttacaaaagattgaaatttaatttttctcaattaatacttt 48622239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 506
Target Start/End: Complemental strand, 3491443 - 3491405
Alignment:
Q  468 tttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  3491443 tttaacatgtgccctaagggcacaagttaacatgaccct 3491405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 37050784 - 37050714
Alignment:
Q  384 ttttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttc 454  Q
    |||||||||| |||||| || |||||| || |||||| ||||||||||||||||  | ||| |||||||||    
T  37050784 ttttgtattgaaaattgtactaatttacttttcaaaagattgaaatttaattttttttaataaatactttc 37050714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 301
Target Start/End: Original strand, 3824808 - 3824885
Alignment:
Q  224 agtgacggatccatgaattttgaatagtgaaggcactttatatggacaacttatatgtaaatttgtaacacctgtgaa 301  Q
    ||||||||||||| |||||| ||||||||   ||| ||||||||| || |||| || |||||||||| |||| |||||    
T  3824808 agtgacggatccaggaatttagaatagtggcagcattttatatgggcaccttaaatataaatttgtagcacccgtgaa 3824885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 48217564 - 48217527
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  48217564 ttaacacgtgccctaagggcacaagataacatgaccct 48217527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 631 - 692
Target Start/End: Complemental strand, 31169306 - 31169245
Alignment:
Q  631 atctcaccatccaaggtgtttgtgaagtgtttcccaacccatgaattccacccaaagacact 692  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||  ||| ||||||||||    
T  31169306 atctcactatccaaggtgtttgtgaagtgtttcccaacccaagaatctcacacaaagacact 31169245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 10701859 - 10701930
Alignment:
Q  381 aatttttgtattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatacttt 453  Q
    |||||||| |||| ||||||||||||||||||| |||||| ||||||||||||||||| | ||| ||||||||    
T  10701859 aatttttgcattg-aaattgcaccaatttatttttcaaaagattgaaatttaattttctttaataaatacttt 10701930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 641 - 695
Target Start/End: Complemental strand, 23575275 - 23575221
Alignment:
Q  641 ccaaggtgtttgtgaagtgtttcccaacccatgaattccacccaaagacactcaa 695  Q
    ||||||||||||| |||||||| |||||||||||||  ||| |||||||||||||    
T  23575275 ccaaggtgtttgtcaagtgttttccaacccatgaatctcactcaaagacactcaa 23575221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 25119873 - 25119910
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| |||||||||||||||||||||||||||||||    
T  25119873 ttaacatgtgcccttagggcacaagttaacatgaccct 25119910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 536 - 676
Target Start/End: Complemental strand, 31151115 - 31150972
Alignment:
Q  536 aaatcctaatttttgcccatttttcaagacacttaaaccgacaatgaatcctaaaaataac-caagagaaaaagttttttgatatatct--taatgagat 632  Q
    ||||| ||||||||| ||||||| |||| |||| ||||  |||||||||| |||  | ||  ||||||| |||| |||| ||| | |||  |||| | ||    
T  31151115 aaatcttaatttttgtccattttccaagtcactcaaactcacaatgaatcataactagaaaacaagagataaagcttttggatctttctattaattaaat 31151016  T
Q  633 ctcaccatccaaggtgtttgtgaagtgtttcccaacccatgaat 676  Q
    ||||| | ||||||| ||||||||||||||||||||||| ||||    
T  31151015 ctcactacccaaggtatttgtgaagtgtttcccaacccaagaat 31150972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 11667128 - 11667167
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccctaa 508  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  11667128 ttaacatgtgccctaagggcacaagttaacatgaccctaa 11667167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 506
Target Start/End: Original strand, 21148534 - 21148572
Alignment:
Q  468 tttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  21148534 tttaacatgtgcccttagggcacaaattaacatgaccct 21148572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 626 - 695
Target Start/End: Complemental strand, 45685626 - 45685556
Alignment:
Q  626 atgagatctcaccatccaaggtgtttgtgaagtgtttcccaacccatgaat-tccacccaaagacactcaa 695  Q
    ||||||||| || ||| |||||||||||||| |||||| ||||||| |||| ||  |||||||||||||||    
T  45685626 atgagatctgactatcaaaggtgtttgtgaattgtttcacaacccaagaatctcaccccaaagacactcaa 45685556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 476 - 505
Target Start/End: Original strand, 20011355 - 20011384
Alignment:
Q  476 gtgcccttagggcacaagttaacatgaccc 505  Q
    ||||||||||||||||||||||||||||||    
T  20011355 gtgcccttagggcacaagttaacatgaccc 20011384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 468 - 505
Target Start/End: Complemental strand, 38073602 - 38073565
Alignment:
Q  468 tttaacacgtgcccttagggcacaagttaacatgaccc 505  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  38073602 tttaacatgtgccctaagggcacaagttaacatgaccc 38073565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 407 - 504
Target Start/End: Complemental strand, 24887982 - 24887885
Alignment:
Q  407 tttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtgcccttagggcacaagttaacatgacc 504  Q
    |||||||||||||| ||||||||||||||||||  |||  ||| ||||        |||||||||||||||||||||| |||||||||||||| ||||    
T  24887982 tttatttctcaaaagattgaaatttaattttccataatagatattttctctttgtagaaactttaacacgtgcccttaaggcacaagttaacacgacc 24887885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 20574886 - 20574846
Alignment:
Q  468 tttaacacgtgcccttagggcacaagttaacatgaccctaa 508  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  20574886 tttaacatgtgccctaagggcacaagttaacatgaccctaa 20574846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 469 - 505
Target Start/End: Original strand, 22019523 - 22019559
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccc 505  Q
    |||||| ||||||||||||||||||||||||||||||    
T  22019523 ttaacatgtgcccttagggcacaagttaacatgaccc 22019559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 389 - 514
Target Start/End: Original strand, 49026019 - 49026144
Alignment:
Q  389 tattggaaattgcaccaatttatttctcaaaatattgaaatttaattttcctcaattaatactttcnnnnnnnggaaactttaacacgtgcccttagggc 488  Q
    ||||||||||||  | |||||||||||||||| ||||||| ||| |||| |||||| ||||||| |       |||| | |||||| ||| | |||||||    
T  49026019 tattggaaattgtgcaaatttatttctcaaaaaattgaaaattattttttctcaataaatacttgctatttgtggaatccttaacatgtgtctttagggc 49026118  T
Q  489 acaagttaacatgaccctaaaagaaa 514  Q
     || |||| |||||||| ||||||||    
T  49026119 tcatgttagcatgacccaaaaagaaa 49026144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 28675712 - 28675675
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  28675712 ttaacatgtgccctaagggcacaagttaacatgaccct 28675675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 29508798 - 29508835
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  29508798 ttaacatgtgcccttagggcacaagttaacacgaccct 29508835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 476 - 505
Target Start/End: Original strand, 30666983 - 30667012
Alignment:
Q  476 gtgcccttagggcacaagttaacatgaccc 505  Q
    ||||||||||||||||||||||||||||||    
T  30666983 gtgcccttagggcacaagttaacatgaccc 30667012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 50297664 - 50297627
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  50297664 ttaacatgtgccctaagggcacaagttaacatgaccct 50297627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 624 - 672
Target Start/End: Original strand, 39533103 - 39533151
Alignment:
Q  624 taatgagatctcaccatccaaggtgtttgtgaagtgtttcccaacccat 672  Q
    |||||||||||||| | |||| |||||||||||||||||||||||||||    
T  39533103 taatgagatctcactacccaatgtgtttgtgaagtgtttcccaacccat 39533151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 512
Target Start/End: Original strand, 39364556 - 39364599
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccctaaaaga 512  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  39364556 ttaacacgtgcccttatggcataagttaacatgaccctaaaaga 39364599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 410032 - 410069
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| |||||||||||||||||||||||||||||||    
T  410032 ttaacatgtgcccttagggcacaagttaacatgaccct 410069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 510
Target Start/End: Original strand, 15079962 - 15080003
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccctaaaa 510  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  15079962 ttaacacgtgtccttaggacacaagttaacatgaccctaaaa 15080003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 469 - 504
Target Start/End: Complemental strand, 44068809 - 44068774
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgacc 504  Q
    |||||| |||||||||||||||||||||||||||||    
T  44068809 ttaacatgtgcccttagggcacaagttaacatgacc 44068774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 502
Target Start/End: Original strand, 25626607 - 25626640
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatga 502  Q
    |||||| |||||||||||||||||||||||||||    
T  25626607 ttaacatgtgcccttagggcacaagttaacatga 25626640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 469 - 512
Target Start/End: Complemental strand, 8114331 - 8114288
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccctaaaaga 512  Q
    |||||| ||||||||||||||||||||||||||||||| |||||    
T  8114331 ttaacatgtgcccttagggcacaagttaacatgacccttaaaga 8114288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 695
Target Start/End: Original strand, 37043789 - 37043860
Alignment:
Q  624 taatgagatctcaccatccaaggtgtttgtgaagtgtttcccaacccatgaattccacccaaagacactcaa 695  Q
    |||||| ||||||||||||||||||||||| |||||||| ||   ||| ||||  ||| |||||||||||||    
T  37043789 taatgaaatctcaccatccaaggtgtttgtcaagtgttttccggtccaagaatctcactcaaagacactcaa 37043860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 506
Target Start/End: Original strand, 11257999 - 11258037
Alignment:
Q  468 tttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  11257999 tttaacatgtgccctaagggcacaagttaacatgaccct 11258037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 5494014 - 5494051
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  5494014 ttaactcgtgcccttaaggcacaagttaacatgaccct 5494051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 509
Target Start/End: Complemental strand, 36491938 - 36491905
Alignment:
Q  476 gtgcccttagggcacaagttaacatgaccctaaa 509  Q
    ||||||||||||||||||||||||||||||||||    
T  36491938 gtgcccttagggcacaagttaacatgaccctaaa 36491905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 469 - 509
Target Start/End: Original strand, 12289134 - 12289174
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccctaaa 509  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  12289134 ttaacatgtgcccttagggcacaagttaatatgaccctaaa 12289174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 643 - 695
Target Start/End: Complemental strand, 19017978 - 19017926
Alignment:
Q  643 aaggtgtttgtgaagtgtttcccaacccatgaattccacccaaagacactcaa 695  Q
    |||||||||||||||||||||| ||||||  |||  |||||||||||||||||    
T  19017978 aaggtgtttgtgaagtgtttcctaacccaaaaatatcacccaaagacactcaa 19017926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 629 - 669
Target Start/End: Original strand, 31336297 - 31336337
Alignment:
Q  629 agatctcaccatccaaggtgtttgtgaagtgtttcccaacc 669  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  31336297 agatctcactatccaaagtgtttgtgaagtgtttcccaacc 31336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 10431552 - 10431595
Alignment:
Q  467 ctttaacacgtgcccttagggcacaagttaacatgaccctaaaa 510  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||    
T  10431552 ctttaacatgtgcccttagggcacaagttaacttgaccttaaaa 10431595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 671
Target Start/End: Original strand, 34842816 - 34842863
Alignment:
Q  624 taatgagatctcaccatccaaggtgtttgtgaagtgtttcccaaccca 671  Q
    |||||||||||||| | |||||||||||||||| ||||| ||||||||    
T  34842816 taatgagatctcactacccaaggtgtttgtgaaatgttttccaaccca 34842863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Original strand, 34178230 - 34178267
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||||||||||||| |||||||||||||    
T  34178230 ttaacatgtgcccttagggcacaaattaacatgaccct 34178267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 506
Target Start/End: Complemental strand, 7509669 - 7509632
Alignment:
Q  469 ttaacacgtgcccttagggcacaagttaacatgaccct 506  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  7509669 ttaacatgtgcccttagggcacaagttagcatgaccct 7509632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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