View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639-Insertion-4 (Length: 1015)
Name: NF5639-Insertion-4
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 214 - 542
Target Start/End: Complemental strand, 23680038 - 23679714
Alignment:
| Q |
214 |
gtccttcaatttctatgagttgaataatgtcaggaatcaatcgccttataacttatgtaaattgagtaatctcattcattgatagatattacttgtttta |
313 |
Q |
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| T |
23680038 |
gtccttcaatttctatgagttgaataatgtcaggaatcaatcgccttataacttatgtaaattgagtaatctcattcattgatagatattacttgtttta |
23679939 |
T |
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| Q |
314 |
cactctacacttagctcttcttttcccttagatccttcaggatttgcaagagatcttgaaaatacatatctcatatatacttattgaagatatggtaaat |
413 |
Q |
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| T |
23679938 |
cactctatacttagctcttcttttcccttagatccttcaggatttgcaagagatctagaaaatacatatctcatatatacttattgaagatatggtaaat |
23679839 |
T |
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| Q |
414 |
tatgtctttagttatttcttaatttattatcatatatctagaaatgcagaagctagaactgtttaccattgcttaatgagtattaatttatggttctgac |
513 |
Q |
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| T |
23679838 |
tatgtctttagttatttcttaatttattatcatatatctagaaatgcagaagctagaactgtttaccattgcttactgagt----atttatggttccaac |
23679743 |
T |
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| Q |
514 |
attaaaagaagattacataaagagtgcaa |
542 |
Q |
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| T |
23679742 |
attacacgaatattagataaagagtgcaa |
23679714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 638 - 795
Target Start/End: Complemental strand, 23679269 - 23679110
Alignment:
| Q |
638 |
taagacaaatatttcttagaaaataatagcatttctttacatatgatacttgtgtcatctaaacatattgctttggtatgataattgcagcatatttcag |
737 |
Q |
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| T |
23679269 |
taagacaaatatttctcagaaaataatagcatttctttacatatgatacttgtgtcatctaaacatattgctttgatatgataattgcagcatatttcag |
23679170 |
T |
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| Q |
738 |
ttgacaatgtatct--ctctattggtttatagaagattttgtgagatctaatacattctg |
795 |
Q |
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| T |
23679169 |
ttgacaatgtatctctctctattggtttatagaagattttgtgagatctaatacattctg |
23679110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 787 - 956
Target Start/End: Complemental strand, 23672561 - 23672390
Alignment:
| Q |
787 |
tacattctgaggttgtagtcattactcaaattgtttgattggcattctacctttgatacgtactttaaaggagtagatcatcagtcatattgtttcatgt |
886 |
Q |
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| T |
23672561 |
tacattctgaggttgtagtcattactcaaattgtttgattggcattctacctttgatacgtactttaatggagtagatcatcagtcatattgtttcatat |
23672462 |
T |
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| Q |
887 |
aggacacaagtagagatggatagtactatttt--caagacactaacaagtttaaatatgt-aaaactgaatga |
956 |
Q |
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| T |
23672461 |
aggacacaggtagagatggatagtactatttttcaaagacactaac-agtttaaatatgtaaaaactgaatga |
23672390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 23680246 - 23680122
Alignment:
| Q |
8 |
agaagtatcaatttataagggacatgcgttttgtggcttcccttgctacccgatgtgggactcacatcttgcaagagcgtggagtcattcatatccacct |
107 |
Q |
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| T |
23680246 |
agaagtatcaatttataagggacatgcgttttgtggcttcccttgctacccgatgtgggactcacatcttgcaagagcttggagtcattcatatccacat |
23680147 |
T |
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| Q |
108 |
ctctctcttcacttatcttgtttgc |
132 |
Q |
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| T |
23680146 |
ctctctcttcacttctcttgtttgc |
23680122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 820 - 956
Target Start/End: Complemental strand, 23646527 - 23646390
Alignment:
| Q |
820 |
tttgattggcattctacctttgatacgtactttaaaggagtagatcatcagtcatattgtttcatgtaggacacaagtagagatggatagtacta--ttt |
917 |
Q |
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| T |
23646527 |
tttgattgacattctacctttgatacgtaccgtaaaggagtagatca---gacatattgtttcatataggacacaagtagaaatggacagtactattttt |
23646431 |
T |
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| Q |
918 |
tcaagacactaac-aagtttaaatatgtaaa-actgaatga |
956 |
Q |
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| T |
23646430 |
taaagacactaacaaagtttagatatgtaaacactgaatga |
23646390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 418 - 483
Target Start/End: Original strand, 23701747 - 23701812
Alignment:
| Q |
418 |
tctttagttatttcttaatttattatcatatatctagaaatgcagaagctagaactgtttaccatt |
483 |
Q |
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| T |
23701747 |
tctttagttatgtcttaatctattatcatatatctaaaaatgcagaagccggaactgtttatcatt |
23701812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 483
Target Start/End: Complemental strand, 23664933 - 23664883
Alignment:
| Q |
433 |
taatttattatcatatatctagaaatgcagaagctagaactgtttaccatt |
483 |
Q |
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|||| |||||||||||||||| ||||||||||||| |||||||||| |||| |
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| T |
23664933 |
taatctattatcatatatctaaaaatgcagaagctggaactgtttatcatt |
23664883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 296
Target Start/End: Complemental strand, 23700302 - 23700270
Alignment:
| Q |
264 |
acttatgtaaattgagtaatctcattcattgat |
296 |
Q |
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| T |
23700302 |
acttatgtaaattgagtaatctcattcattgat |
23700270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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