View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5639-Insertion-5 (Length: 960)

Name: NF5639-Insertion-5
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5639-Insertion-5
NF5639-Insertion-5
[»] chr5 (15 HSPs)
chr5 (101-489)||(32549209-32549598)
chr5 (49-761)||(32552414-32553154)
chr5 (59-231)||(32752062-32752231)
chr5 (67-224)||(32748026-32748180)
chr5 (87-232)||(32655666-32655811)
chr5 (145-231)||(32755688-32755774)
chr5 (867-933)||(32548892-32548958)
chr5 (644-719)||(32756288-32756363)
chr5 (644-712)||(32750172-32750240)
chr5 (154-225)||(28475205-28475276)
chr5 (627-714)||(32549064-32549146)
chr5 (87-183)||(25477693-25477786)
chr5 (87-127)||(32660749-32660789)
chr5 (152-231)||(32749626-32749704)
chr5 (644-718)||(32752643-32752718)
[»] chr7 (4 HSPs)
chr7 (87-183)||(32895009-32895102)
chr7 (576-670)||(45832693-45832783)
chr7 (544-600)||(37578105-37578161)
chr7 (164-230)||(37577563-37577629)
[»] chr2 (1 HSPs)
chr2 (526-598)||(16753306-16753379)


Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-148; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 101 - 489
Target Start/End: Complemental strand, 32549598 - 32549209
Alignment:
Q  101 ttgcgatgcagatgcaaatattcataaagatcgagtatggaatgaagacgttccccctgatggttaagagttcagacacgatacttgacgtgaagaagaa 200  Q
    ||||| |||||||||||||||||||| | |||  || || ||  |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32549598 ttgcggtgcagatgcaaatattcatagacatcatgtttgaaaacaagaggttccctctgatggttaagagttcagacacgatacttgacgtgaagaagaa 32549499  T
Q  201 gattcaggacaaggaagggatcccagtgcacggatatgacttgttctttgacaatgaggcgctatgttccaaccaccacacccttgccaactacaacatc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32549498 gattcaggacaaggaagggatcccagtgcacggatatgacttgttctttgacaatgaggcgctatgttccaaccgccacacccttgccaactacaacatc 32549399  T
Q  301 caagataattcaactagtgacctagttgtccgtatcatggcggattagatcaccacctcatcgtgct---gccatcggcgacactataaatgaaatcaaa 397  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||   ||||| ||||||||||||||||||||||||    
T  32549398 caagataattcaactattgacctcgttgtccgtatcatggcggattagatcaccacctcatcttgctgccgccataggcgacactataaatgaaatcaaa 32549299  T
Q  398 cattttaacagtacttttgttctgtcttttgagctgtataatgatttctattactttggataattttcagttattaagcaaacatatttact 489  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||| |||||| |||| ||||||||   ||||  |||||||||||||    
T  32549298 cattttaacagtacttttgttctgtc--ttgagctgtatgatgatttcttttacttgggatgattttcagcatttaaataaacatatttact 32549209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 49 - 761
Target Start/End: Complemental strand, 32553154 - 32552414
Alignment:
Q  49 ctaattgtatgattttgttttcttttgtcattgattaataat-----gcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaat 143  Q
    ||||||||||||||||||||| |||||| |||||||||||||     | |||| |||||||| |||||||||||||||||||||| ||||||||||||||    
T  32553154 ctaattgtatgattttgttttattttgtgattgattaataatttaatgtgttgacaattgcggtgcagatgcaaatattcataaacatcgagtatggaat 32553055  T
Q  144 gaagacgttccccctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgcacggatatgacttg 243  Q
    |||| | ||||||||||||||||||||||| |||||||||||   |||  |  |||||||||| ||||| |||  |||||| ||||| |   | ||  |     
T  32553054 gaagtcattccccctgatggttaagagttcggacacgatactcagcgttcaagagaagattcatgacaatgaaaagatccctgtgcatgatcaagaactt 32552955  T
Q  244 ttctttgacaatgaggcgctatgttccaaccaccacacccttgccaactacaacatccaagataattcaactagtgacctagttgtccgtatcatggcgg 343  Q
    | ||||   |||| | | |||  ||   ||||||  ||||||||||  |||||||| ||||| || ||||||| |||||| |||||||||||||||||||    
T  32552954 tacttttctaatgcgccactagatt---accaccggacccttgccagttacaacatacaagacaagtcaactattgacctcgttgtccgtatcatggcgg 32552858  T
Q  344 attagatcaccacctcatcgtgctgccatcggcgacactataaatgaaatcaaacattttaacagtacttttgttctgtcttttgagctg-----tataa 438  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||     |||||    
T  32552857 attagatcaccacctcatcgtgctgccatcggcgaccctataaatgaaatcaaacattttaacagtacttttgttctgtc--ttgagctgtataatataa 32552760  T
Q  439 tgatttctattactttggataattttca-----gttattaagcaaacatattt----------actagctgaaatcgtacggtaattcttttt-atatgt 522  Q
    ||||||||||||||||||||||| ||||      | |||||||||||||||||          |||||||||||||||||||||||||||||| || |||    
T  32552759 tgatttctattactttggataatgttcaatactataattaagcaaacatatttacttttcaacactagctgaaatcgtacggtaattctttttgatttgt 32552660  T
Q  523 gttgagtatgattcaattgaaaagagtcaggtaacttgaattcactacctgt-gttgaaataaaagtggtgaattgaaaagagggaagatttacttgtga 621  Q
     ||||||||||||||| | |||||||||| |||||||||||| | | ||| |  ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  32552659 cttgagtatgattcaagttaaaagagtcaagtaacttgaattgattccctctatttgaaataaaagtggtgaattgaaaagagggtagatttatttgtga 32552560  T
Q  622 ttctcttctctgagtgagacaaatttacataacctcagtagtcaaagcagattgttagtgatattgcatga--agagagaaagtgtgattct-------- 711  Q
         |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||  | |||||  |||||||||| ||| ||||            
T  32552559 -----ttctctgagtgaaacaaatttacataacctgagtagtgaaagcagattgttagtgatggtacatgaagagagagaaagagtgtttctagtgtttt 32552465  T
Q  712 -attgtttttaaagtaggtatgtgaaatactctgtagcatgtgaatgaaat 761  Q
     |||||||||||||||||| |||||||||||||  ||||||||||||||||    
T  32552464 gattgtttttaaagtaggtgtgtgaaatactctccagcatgtgaatgaaat 32552414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 32752062 - 32752231
Alignment:
Q  59 gattttgttttcttttgtcattgattaataatgcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaatgaagacgttccccct 158  Q
    |||||||| || |||| ||||||||||||   | |||||||||||||   ||||||||||||||||||||||||  ||||||||  |||| |||||||||    
T  32752062 gattttgtattattttttcattgattaat---gtgttggcaattgcggcacagatgcaaatattcataaagatcatgtatggaaacaagatgttccccct 32752158  T
Q  159 gatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgcac 231  Q
     || ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||    
T  32752159 cattgttaagagttcagacacgatactcgatgtgaagaagaaaattcatgacaaggaagggatcccagtgcac 32752231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 67 - 224
Target Start/End: Original strand, 32748026 - 32748180
Alignment:
Q  67 tttcttttgtcattgattaataatgcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaatgaagacgttccccctgatggtta 166  Q
    |||| ||||||||||||||||   | ||||||||||||| ||||||||||||||||||||||||||   |||| ||  |||| |||||||||||||||||    
T  32748026 tttcatttgtcattgattaat---gtgttggcaattgcggtgcagatgcaaatattcataaagatcatatatgaaaacaagaggttccccctgatggtta 32748122  T
Q  167 agagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatccc 224  Q
    |||||||||||||||||||  | |||||||| ||| ||||||||||||||||||||||    
T  32748123 agagttcagacacgatactcaatgtgaagaaaaaggttcaggacaaggaagggatccc 32748180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 32655811 - 32655666
Alignment:
Q  87 taatgcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaatgaagacgttccccctgatggttaagagttcagacacgatactt 186  Q
    ||||| ||||||||||||| |||||||||||||||||||| | |||  ||||| ||  |||| |||||| || |||||||||||||||||||| |||||     
T  32655811 taatgtgttggcaattgcggtgcagatgcaaatattcatagacatcatgtatgaaaacaagaggttccctctaatggttaagagttcagacacaatactc 32655712  T
Q  187 gacgtgaagaagaagattcaggacaaggaagggatcccagtgcacg 232  Q
    || ||||||||||||||||||||||||||||||||||| |||||||    
T  32655711 gatgtgaagaagaagattcaggacaaggaagggatcccggtgcacg 32655666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 145 - 231
Target Start/End: Original strand, 32755688 - 32755774
Alignment:
Q  145 aagacgttccccctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgcac 231  Q
    |||| ||||||||| |||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||||||||||||||||||    
T  32755688 aagatgttccccctcatggttaagagttcagacacgatactggatgtgaaaaagaaaattcatgacaaggaagggatcccagtgcac 32755774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 867 - 933
Target Start/End: Complemental strand, 32548958 - 32548892
Alignment:
Q  867 aaaaacaacaaattaggggcatatcaagcgagaatgacagtcgtgtatgagattaaaacataggtta 933  Q
    |||||||||||||||||||||||||||| ||||||||||   |||||||||||||||||||||||||    
T  32548958 aaaaacaacaaattaggggcatatcaagtgagaatgacatctgtgtatgagattaaaacataggtta 32548892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 644 - 719
Target Start/End: Original strand, 32756288 - 32756363
Alignment:
Q  644 atttacataacctcagtagtcaaagcagattgttagtgatattgcatgaagagagaaagtgtgattctattgtttt 719  Q
    ||||||||||||| |||||| |||||| ||||||||||||| | |||||||||||||||| |||||||| ||||||    
T  32756288 atttacataacctgagtagtgaaagcatattgttagtgatagtacatgaagagagaaagtctgattctagtgtttt 32756363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 644 - 712
Target Start/End: Original strand, 32750172 - 32750240
Alignment:
Q  644 atttacataacctcagtagtcaaagcagattgttagtgatattgcatgaagagagaaagtgtgattcta 712  Q
    |||||||||||||  ||||| |||||||||||||||||||| | |||||||||||||||| ||||||||    
T  32750172 atttacataacctgtgtagtgaaagcagattgttagtgatagtacatgaagagagaaagtctgattcta 32750240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 225
Target Start/End: Original strand, 28475205 - 28475276
Alignment:
Q  154 cccctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatccca 225  Q
    ||||||| |||| ||||||||||||||||| | || ||||||||||||||||  ||||||||||||||||||    
T  28475205 cccctgagggttgagagttcagacacgatagtcgatgtgaagaagaagattcttgacaaggaagggatccca 28475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 627 - 714
Target Start/End: Complemental strand, 32549146 - 32549064
Alignment:
Q  627 ttctctgagtgagacaaatttacataacctcagtagtcaaagcagattgttagtgatattgcatgaagagagaaagtgtgattctatt 714  Q
    |||||||||||||| |||||||||||| || |||||     ||||||||||||||||| | ||| |||||| ||||||||||||||||    
T  32549146 ttctctgagtgagataaatttacataatctgagtag-----gcagattgttagtgatagtacatcaagagaaaaagtgtgattctatt 32549064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 25477693 - 25477786
Alignment:
Q  87 taatgcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaatg-aagacgttccccctgatggttaagagttcagacacgata 183  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||| |    |||||| | |||  | ||||| ||| ||||||||||||||||||||||    
T  25477693 taatgtgttggcaattgcggtgcagatgctaatattcataaagacc----atggaaagtaaggtgatccccttgagggttaagagttcagacacgata 25477786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 32660789 - 32660749
Alignment:
Q  87 taatgcgttggcaattgcgatgcagatgcaaatattcataa 127  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  32660789 taatgtgttggcaattgcgatgcagatgcaaattttcataa 32660749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 32749626 - 32749704
Alignment:
Q  152 tccccctgatggttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgcac 231  Q
    |||||||||||||||  |||||||||||||||| | | ||||||||||||| | | || | ||||| |||||||||||||    
T  32749626 tccccctgatggttacaagttcagacacgatac-taatgtgaagaagaagaattatgaaatggaagcgatcccagtgcac 32749704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 718
Target Start/End: Original strand, 32752643 - 32752718
Alignment:
Q  644 atttacataacctcagtagtcaaa-gcagattgttagtgatattgcatgaagagagaaagtgtgattctattgttt 718  Q
    ||||| ||||||| |||||| ||| | | ||||||||||||| | |||||||||||||||| |||||||| |||||    
T  32752643 atttaaataacctaagtagtgaaaaggaaattgttagtgatagtacatgaagagagaaagtctgattctagtgttt 32752718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 32895009 - 32895102
Alignment:
Q  87 taatgcgttggcaattgcgatgcagatgcaaatattcataaagatcgagtatggaatgaagacgttccccctgatggttaagagttcagacacgata 183  Q
    ||||| ||||||||||||| |||||||||||||||||||| ||| | ||  ||||    ||| ||||||||||||||||||||||||||||| ||||    
T  32895009 taatgtgttggcaattgcggtgcagatgcaaatattcatagagacccagggtgga---gagaggttccccctgatggttaagagttcagacaggata 32895102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 576 - 670
Target Start/End: Original strand, 45832693 - 45832783
Alignment:
Q  576 ttgaaataaaagtggtgaattgaaaagagggaagatttacttgtgattctcttctctgagtgagacaaatttacataacctcagtagtcaaagca 670  Q
    |||||||| |||||||||||||||||||||  ||||||| |||||||||||||     ||||| | ||||||||||||||| |||||| ||||||    
T  45832693 ttgaaatataagtggtgaattgaaaagaggatagatttatttgtgattctcttt----agtgaaataaatttacataacctaagtagtgaaagca 45832783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 37578105 - 37578161
Alignment:
Q  544 aagagtcaggtaacttgaattcactacctgtgtt-gaaataaaagtggtgaattgaaa 600  Q
    |||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||||    
T  37578105 aagagtcaggtaacttcaat-cactccctgtgtttgaaataaaagtggtgaattgaaa 37578161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 230
Target Start/End: Original strand, 37577563 - 37577629
Alignment:
Q  164 ttaagagttcagacacgatacttgacgtgaagaagaagattcaggacaaggaagggatcccagtgca 230  Q
    ||||||||||||||||||||   || |||||| |||||||||  ||||| |||||||||||| ||||    
T  37577563 ttaagagttcagacacgatagccgatgtgaaggagaagattcttgacaatgaagggatcccaatgca 37577629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 526 - 598
Target Start/End: Original strand, 16753306 - 16753379
Alignment:
Q  526 gagtatgattcaattgaaaagagtcaggtaacttgaattcactacctgtg-ttgaaataaaagtggtgaattga 598  Q
    |||| ||||| ||| |||||||||||  |||||||||| |||| |||||| ||| ||||| |||||||||||||    
T  16753306 gagtctgatttaatcgaaaagagtcaattaacttgaatccactccctgtgtttggaataatagtggtgaattga 16753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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