View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639-Insertion-6 (Length: 362)
Name: NF5639-Insertion-6
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 177 - 362
Target Start/End: Complemental strand, 19805176 - 19804991
Alignment:
| Q |
177 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
276 |
Q |
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| T |
19805176 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
19805077 |
T |
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| Q |
277 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttg |
362 |
Q |
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| T |
19805076 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttg |
19804991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 177 - 362
Target Start/End: Complemental strand, 27775650 - 27775465
Alignment:
| Q |
177 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
276 |
Q |
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| T |
27775650 |
agttgtgatttctcactgtaattcaattccgattcaaacaaaaatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
27775551 |
T |
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| Q |
277 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttg |
362 |
Q |
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| T |
27775550 |
agattcatctttacattttcgtgcaattcggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttg |
27775465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 177 - 362
Target Start/End: Original strand, 40577886 - 40578069
Alignment:
| Q |
177 |
agttgtgatttctgactgtaattcaattccgattcaaacaataatcgttcctgcaaaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
276 |
Q |
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| T |
40577886 |
agttgtgatttctta--gtaattcaattccgattcaaacaataatcgttcctgcagaattgtatgagattttcgaaccactttgtgaagaaataaatttc |
40577983 |
T |
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| Q |
277 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatccctgttcttatttatttatttg |
362 |
Q |
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| T |
40577984 |
agattcatctttacattttcgtgcaatttggtccctgaaagtttctgtttgcaatttctgcatctctgttcttatttatttatttg |
40578069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 40577758 - 40577820
Alignment:
| Q |
49 |
tgaagaaattcctgaagcaggtcattggaaaaatcgtgccaccatgaaatcgtaacagaaacg |
111 |
Q |
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| T |
40577758 |
tgaagaaattcctgaagcaagtcattggaaaaatcgtgccacaatggaatcgtaacagaaacg |
40577820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 40577693 - 40577738
Alignment:
| Q |
8 |
atatttcccctggcaaatacacgtgtttcttatagtgtgtgtgaag |
53 |
Q |
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| T |
40577693 |
atatttcccctggcaaatacacgtgtttcttgtagtgtgtgtgaag |
40577738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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