View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5639-Insertion-7 (Length: 360)

Name: NF5639-Insertion-7
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5639-Insertion-7
NF5639-Insertion-7
[»] chr7 (1 HSPs)
chr7 (8-360)||(43099199-43099555)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 360
Target Start/End: Complemental strand, 43099555 - 43099199
Alignment:
Q  8 gttctagcatacactcgtctcgcaccttttcaccaaccaacacatagcaagaccatgttacgagtacaattcgaagttctcgattattttgtggataaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43099555 gttctagcatacactcgtctcgcaccttttcaccaaccaacacatagcaagaccatgttacgagtacaattcgaagttctcgattattttgtggataaca 43099456  T
Q  108 gggtatcttttggtattactgatggaagagtttgtggatttgtgcaatttggggtggtggtgaatactttgattaagatggatgggttgtttcatccgag 207  Q
    | |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43099455 gtgtatctttcggtattactgatggaagagttcgtggatttgtgcaatttggggtggtggtgaatactttgattaagatggatgggttgtttcatccgag 43099356  T
Q  208 tgaatatcacttgaaggttacacgcaaacctttgaactttggaattccatcgtccaatattaacaacgttacttgggaattattgggtagtgtagcatgt 307  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43099355 tgaatatcgcttgaaggttacatgcaaacctttgaactttggaattccatcgtccaacattaacaacgttacttgggaattattgggtagtgtagcatgt 43099256  T
Q  308 taatgatttaacaatggattag----ggagtgtgcatgttcaatgttttaatttgtg 360  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  43099255 taatgatttaacaatggattaggggtggagtgtgcatgttcaatgttttaatttgtg 43099199  T

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