View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5639_high_1 (Length: 813)

Name: NF5639_high_1
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5639_high_1
NF5639_high_1
[»] chr4 (1 HSPs)
chr4 (13-795)||(22015937-22016718)
[»] chr2 (6 HSPs)
chr2 (271-374)||(40059108-40059211)
chr2 (271-374)||(40077136-40077239)
chr2 (271-374)||(40085046-40085149)
chr2 (674-760)||(40084890-40084976)
chr2 (674-760)||(40058952-40059038)
chr2 (674-760)||(40076966-40077052)
[»] chr8 (2 HSPs)
chr8 (440-486)||(16657508-16657554)
chr8 (143-175)||(34489298-34489330)
[»] chr3 (3 HSPs)
chr3 (675-712)||(40097577-40097614)
chr3 (146-179)||(25204150-25204183)
chr3 (301-374)||(44352747-44352820)
[»] chr1 (1 HSPs)
chr1 (144-179)||(47126339-47126374)
[»] chr6 (1 HSPs)
chr6 (141-178)||(2002150-2002187)
[»] chr5 (1 HSPs)
chr5 (143-180)||(35053681-35053718)


Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 13 - 795
Target Start/End: Original strand, 22015937 - 22016718
Alignment:
Q  13 attatactgacaagccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22015937 attatactgacaagccaaaatatgtaatcaatcatttatttaatgtctttcaatagaaaaagttctgaaaatacactatctgataaatatctaaatgatc 22016036  T
Q  113 ttctatctatgaagcacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttctaagcttttatgtttgaacactcacacaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22016037 ttctatctatgaagcacggatgcagacatggacacaccttcaatctaaagtgtcggtgctacatagtcttttaagcttttatgtttgaacactcacacaa 22016136  T
Q  213 tgcaatgtaagaaatagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggttcgtgcaggttccagaaaaca 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22016137 tgcaatgtaagaaatagaaaagggaaaacagaagaacaatatgaagatggaaaagaacagaacctggcctcgaaccggctcgtgcaggttccagaaaaca 22016236  T
Q  313 taagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016237 taagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatctacaataacaaaatataccattgttataagttcaaacatc 22016336  T
Q  413 aaacacaaattgaaaaagtactgtatatctatgaagcaccgacacaaacacatacatcaaacacaacactgacaagtaaacattgtaataatagttagaa 512  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22016337 aaacacaaattgaaaaagtactgtatatctatgaagcacagacacaaacacatacatcaaacacaacactgacacgtaaacattgtaataatagttagaa 22016436  T
Q  513 gaaaaaataaataaatgtcattaaatgtaatcccatatatcagtgtcataatggtatataacaccgacaaatgttaaacacaagacacattttcaatctg 612  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016437 gaaaaaa-aaataaatgtcattaaatgtaatcccatatatcagtgtcataatggtatataacaccgacaaatgttaaacacaagacacattttcaatctg 22016535  T
Q  613 aagtgttagtgctacgtgctacacgggtgtatnnnnnnnnnnnnnnnnnnnnnngacaaggaacctgaggagtgctacgaggataatgaatggaaccaga 712  Q
    ||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||||||||    
T  22016536 aagtgttagtgctacgtgctacacgggtgtataaaaaaaaaaacagagagaaaagacaaggaacctgaggagtgctacgaggataatgaatggaaccaga 22016635  T
Q  713 cataagaaccctgcgtttaccatcaatgaccaatgctctatgatcataggtaacattggaacaaaaagaagcaggaacataaa 795  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22016636 cataagaaccctgcgtttaccatcaatgaccaatgctctatgatcataggtaacattggaacaaaaagaagcaggaacataaa 22016718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 40059211 - 40059108
Alignment:
Q  271 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 370  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40059211 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40059112  T
Q  371 tcta 374  Q
    ||||    
T  40059111 tcta 40059108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 40077239 - 40077136
Alignment:
Q  271 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 370  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40077239 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaatgacatcaagtcctccatctttagatttctgaataaggtctggccaca 40077140  T
Q  371 tcta 374  Q
    ||||    
T  40077139 tcta 40077136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 40085149 - 40085046
Alignment:
Q  271 agaacctggcctcgaaccggttcgtgcaggttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccaca 370  Q
    ||||||||||||  ||| ||||| || | ||||||||||||||| || ||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||    
T  40085149 agaacctggcctttaacaggttcatgtaagttccagaaaacataggtttcaataacatcaagtcctccatctttagatttctgaataaggtctggccaca 40085050  T
Q  371 tcta 374  Q
    ||||    
T  40085049 tcta 40085046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 674 - 760
Target Start/End: Complemental strand, 40084976 - 40084890
Alignment:
Q  674 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 760  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || |||||||||||||||||||||||||||||||||||    
T  40084976 aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcata 40084890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 760
Target Start/End: Complemental strand, 40059038 - 40058952
Alignment:
Q  674 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 760  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || ||||||||||||||||||||||||||||| |||||    
T  40059038 aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata 40058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 760
Target Start/End: Complemental strand, 40077052 - 40076966
Alignment:
Q  674 aacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcata 760  Q
    |||||| ||||| |||||||| || ||||| |||||||| || |  || || ||||||||||||||||||||||||||||| |||||    
T  40077052 aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata 40076966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 440 - 486
Target Start/End: Complemental strand, 16657554 - 16657508
Alignment:
Q  440 tctatgaagcaccgacacaaacacatacatcaaacacaacactgaca 486  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||||    
T  16657554 tctatgaagcaccgacacaaacacagacatcaaacacgacaatgaca 16657508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 34489298 - 34489330
Alignment:
Q  143 gacacaccttcaatctaaagtgtcggtgctaca 175  Q
    |||||||||||||||||||||||||||||||||    
T  34489298 gacacaccttcaatctaaagtgtcggtgctaca 34489330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 712
Target Start/End: Complemental strand, 40097614 - 40097577
Alignment:
Q  675 acctgaggagtgctacgaggataatgaatggaaccaga 712  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  40097614 acctgaggagtgctacgaggataatgaattgaaccaga 40097577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 25204183 - 25204150
Alignment:
Q  146 acaccttcaatctaaagtgtcggtgctacatagt 179  Q
    |||| |||||||||||||||||||||||||||||    
T  25204183 acacattcaatctaaagtgtcggtgctacatagt 25204150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 44352747 - 44352820
Alignment:
Q  301 ttccagaaaacataagtctcaatcacatcaattcccccatcttttgatttctgaataaggtcaggccacatcta 374  Q
    |||||||||||||| || ||||| ||||| ||||| || ||||||| | | ||||||||  |||||||||||||    
T  44352747 ttccagaaaacataggtttcaatgacatctattccaccttcttttgctgtttgaataagagcaggccacatcta 44352820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 179
Target Start/End: Original strand, 47126339 - 47126374
Alignment:
Q  144 acacaccttcaatctaaagtgtcggtgctacatagt 179  Q
    ||||||||||||||||||||||||||| ||||||||    
T  47126339 acacaccttcaatctaaagtgtcggtgatacatagt 47126374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 2002187 - 2002150
Alignment:
Q  141 tggacacaccttcaatctaaagtgtcggtgctacatag 178  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  2002187 tggacaaaccttcaatctaatgtgtcggtgctacatag 2002150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 35053718 - 35053681
Alignment:
Q  143 gacacaccttcaatctaaagtgtcggtgctacatagtc 180  Q
    |||||||||||||||  |||||||||||||||||||||    
T  35053718 gacacaccttcaatcagaagtgtcggtgctacatagtc 35053681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University