View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639_high_2 (Length: 601)
Name: NF5639_high_2
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 46794796 - 46794477
Alignment:
| Q |
12 |
atcatcaacaaaacctaattcctactatccctaaggaattaccaagtttcaaccacaatattaatgattactccttattcccttgttcaactccaaattg |
111 |
Q |
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| T |
46794796 |
atcatcaccaaaacctaattcctactatccctaaggaattaccaagtttcaaccacaatattaatgattactccttattcccttgttcaactccaaattg |
46794697 |
T |
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| Q |
112 |
ggagactagctccaacttttgtggaatagccactatgaatctatctacatgcttcttgaatccgtggtaagtaattaactaagtgaatgtttgatatcac |
211 |
Q |
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| T |
46794696 |
ggagactagctccaacttttgtggaatagccactatgaatctatctacatgcttcttgaatccgtggtaagtaattaactaagtgaatgtctgatatcat |
46794597 |
T |
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| Q |
212 |
aacgagcttgaaagaatcatagagaatcaaatgattttgacaaaagttttattttaaagtttcaacaaaatcaccaagttactttgattcagtcaacact |
311 |
Q |
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| T |
46794596 |
agcgaccttgaaagaattacagagaatcaagtgattttgacaaaagttttattttaaagtttcaacaaaatcatcaaattactttgattcagtca--act |
46794499 |
T |
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| Q |
312 |
cagaactaagtgaatgtttggc |
333 |
Q |
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| T |
46794498 |
cagaactaagtgaatgtctggc |
46794477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 328 - 588
Target Start/End: Complemental strand, 46794447 - 46794198
Alignment:
| Q |
328 |
tttggcaaaagttttactttaaagtttcaacaaaataacggtgctactttgattcagtcaaactcagagtgattaattaatttaaattttaattaatcat |
427 |
Q |
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| T |
46794447 |
tttgacaaaagttttactttaaagtttcaacaaaataacggtgctactttgattcagtcaaactcagagtgattaattaatttaaattttaattaatcat |
46794348 |
T |
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| Q |
428 |
attattctctatgcattaagcatattcttctcaaactattttaaattagtacttttaatcaaactcnnnnnnnaataggaaaatgtttaagtgtaattaa |
527 |
Q |
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| T |
46794347 |
attattctctatgcattaagcatattcttctcaaactattttaaat-----------atcaaactctttttttaataggaaaatgtttaagtgtaattaa |
46794259 |
T |
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| Q |
528 |
ttaatgtgtttgaggtgttgattttgtagaggttggaaaatcttgggaggagcgaaagaat |
588 |
Q |
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| T |
46794258 |
ttaatgtgtttgaggtgttgattttgtagaggttggaaaatcttgggaggtgcgaaagaat |
46794198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 46794478 - 46794387
Alignment:
| Q |
217 |
gcttgaaagaatcatagagaatcaaa-tgattttgacaaaagttttattttaaagtttcaacaaaatcaccaagttactttgattcagtcaa |
307 |
Q |
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| T |
46794478 |
gcttgaaagaatcacatagaatcaacgtaattttgacaaaagttttactttaaagtttcaacaaaataacggtgctactttgattcagtcaa |
46794387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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