View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639_high_3 (Length: 536)
Name: NF5639_high_3
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Original strand, 37386512 - 37387015
Alignment:
| Q |
11 |
gatgaactacttcatatttcccttcccttatttattaagtttagttttaataggaatgatccattgatagagagatactcctaactaaaatccgagtaac |
110 |
Q |
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| T |
37386512 |
gatgaactacttcatatttcccttcccttatttataaagtttagttttaataggaatgatccattgatagagagatactcctaactaaaatccgagtaac |
37386611 |
T |
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| Q |
111 |
agttgttgcaattaattcgatatatcttcccatcacttccatcattaatttaccagagcttattgaccaatataacttggttaaatgtttgaaatattaa |
210 |
Q |
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| T |
37386612 |
agttgttgcaattaattcgatatatcttcccatcacttccatcattaatttaccagagctcattgaccaatataacttggttaaatgtttgaaatattaa |
37386711 |
T |
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| Q |
211 |
tggaatcttggtttttaggtgaaggagttgttgggaattataattatgtttttgagagcctagctagcctatacggtgagagtaatgtgcttttaaagta |
310 |
Q |
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| T |
37386712 |
tggaatcttggtttttaggtgaatgagttgttgggaatcataattatgtttttgagagcctagctagcctatacggtgagagtaatgtgcttttaaagta |
37386811 |
T |
|
| Q |
311 |
gaatgggcacagtggccctttatttgggtttgcatgtatatgttatgaggatgaatggggttgtttctgtggcaagtgtctgcttggtgaattttaagct |
410 |
Q |
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| T |
37386812 |
gaatgggcacagtggccctttatttgggtttgc------atgttatgaggatgaatggggttgtttctgtggcaagtgtctgcttggtgaattttaagct |
37386905 |
T |
|
| Q |
411 |
tcagtgatgcaggcttttgaagaaaatttagtgcaaaggctagatgagtagataaatttactatcagtatcacaaacagaacgtttagaggaccactcag |
510 |
Q |
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| T |
37386906 |
tcagtgatgcaggcttttgaagaaaatttagtgcaaaggctagatgagtagataaatttactatcagtatcacaaacagaacgtttagaggaccactcag |
37387005 |
T |
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| Q |
511 |
accaagaatt |
520 |
Q |
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| T |
37387006 |
accaagaatt |
37387015 |
T |
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