View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639_high_6 (Length: 438)
Name: NF5639_high_6
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 31 - 422
Target Start/End: Original strand, 22364971 - 22365362
Alignment:
| Q |
31 |
tataaagggatggaaaatatgaacacaatgatatctaaaccaaagggcnnnnnnnctttgataatgtcaatggtcaagaaaatagtttgatactatagac |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22364971 |
tataaagggatggaaaatatgaacacaatgatatctaaaccaaagggcaaaaaaactttgataatgtcaatggtcaagaaaatagtttgatactatagac |
22365070 |
T |
|
| Q |
131 |
catagtatactttgagaaatatccaaaaaggtggagctctcgttcttagttcgtaaggaaaaattgtaagaatgtaaaagccacactaaaaagaaaacga |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365071 |
catagtatactttgagaaatatccaaaaaggtggagctctcattcttagttcgtaaggaaaaattgtaagaatgtaaaagccacactaaaaagaaaacga |
22365170 |
T |
|
| Q |
231 |
aacacacacaattgaagcatgtcgcaaactcagcaacaaatggaattatggatatggtgctttttattgttccttaagtaaattactttaatctatgtaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365171 |
aacacacacaattgaagcatgtcgcaaactcagcaacaaatggaattatggatatggtgctttttattgttccttaagtaaattactttaatctatgtaa |
22365270 |
T |
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| Q |
331 |
atttcagtttcaacttctctattatcttaattttcttttcctattcatgaattttagttttagatcaacagtccaaattggaaccaacatat |
422 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
22365271 |
atttcagtttcaacttctctattatcttgattttcttttcctattcatgaattttagttttagatcaaaagtccaaattggaactaacatat |
22365362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 206 - 422
Target Start/End: Original strand, 2788417 - 2788633
Alignment:
| Q |
206 |
aaaagccacactaaaaagaaaacgaaacacacacaattgaagcatgtcgcaaactcagcaacaaatggaattatggatatggtgctttttattgttcctt |
305 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
2788417 |
aaaagccacacttaaaagaaaacgaaacacacacaattgaagcatgtcgcaaactcagcaacaactggaattatggatatggtgccttttattgttcctg |
2788516 |
T |
|
| Q |
306 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttaattttcttttcctattcatgaattttagttttagatcaacagtcca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
2788517 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagattaaaaatcca |
2788616 |
T |
|
| Q |
406 |
aattggaaccaacatat |
422 |
Q |
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||||||||||||||||| |
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| T |
2788617 |
aattggaaccaacatat |
2788633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 31 - 145
Target Start/End: Original strand, 2788301 - 2788415
Alignment:
| Q |
31 |
tataaagggatggaaaatatgaacacaatgatatctaaaccaaagggcnnnnnnnctttgataatgtcaatggtcaagaaaatagtttgatactatagac |
130 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2788301 |
tataaagggatgaaaaatatgaacacaatgatatctaaaccaaagggcaaaagaactttgataatgtcaatggccaagaaaatagtttgatactatagac |
2788400 |
T |
|
| Q |
131 |
catagtatactttga |
145 |
Q |
| |
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||||||||||||||| |
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|
| T |
2788401 |
catagtatactttga |
2788415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 9368793 - 9368764
Alignment:
| Q |
93 |
aatgtcaatggtcaagaaaatagtttgata |
122 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
9368793 |
aatgtcaatggtcaagaaaatagtttgata |
9368764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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