View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639_low_4 (Length: 471)
Name: NF5639_low_4
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 43 - 301
Target Start/End: Complemental strand, 8942352 - 8942096
Alignment:
| Q |
43 |
aattcctcaaaattcatgacnnnnnnngttgtaccaccaaatgtggatgttgcgtagctagcttcgatggtgatctagctagagcagtagatattgaat- |
141 |
Q |
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| T |
8942352 |
aattcctcaaaattcatgacaaaaaaagttgtaccaccaaatgtggatgttgcgtagctagcttcgatggtga----gctagagcagtagatattgaatc |
8942257 |
T |
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| Q |
142 |
-ttagttggaccggctcacactagactatatcttgtgtcatgttttcttgttaggattaattatgtatatcgttctcaagactcaaatatttaggaataa |
240 |
Q |
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| T |
8942256 |
tttagttggaccagctcacactagactatatcttgtgtcatgttttcttgttaggattaattttgtatatcgttctcaagactcaaatatttaggaataa |
8942157 |
T |
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| Q |
241 |
tgtggaagatgatgataagcgctgatgtttatctcacatatagaaaacttttgagatgtga |
301 |
Q |
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| T |
8942156 |
tgtggaagatgatgataagcgctgatgtttatctcacatatagaaaacttttgagatgtga |
8942096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 313 - 456
Target Start/End: Complemental strand, 8941824 - 8941681
Alignment:
| Q |
313 |
aagttaaattacctcattcaaaatcacaacatgtagatttgagatatgatttttgttacgcgttctctacttaatgtatgtttgatttcacgttttggac |
412 |
Q |
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||||||||||||||||| |||| | ||||||||||||||| |||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
8941824 |
aagttaaattacctcatccaaattgacaacatgtagatttaagatgtgatttttgttacgcgttctccacttaatatatgtttggtttcacgttttggac |
8941725 |
T |
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| Q |
413 |
tatttagcatgcgtttagggctattcaacgcaatattatttgat |
456 |
Q |
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| T |
8941724 |
tatttaacacgcgtttagggctattcaacacaatattatttgat |
8941681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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