View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5639_low_5 (Length: 449)
Name: NF5639_low_5
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 18114278 - 18114699
Alignment:
| Q |
1 |
tggtggtgaatttttggatgaaaaaccataaattgctattttaattttctaattataaggattggatgaataaagttgtttatcaaattaaataaattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18114278 |
tggtggtgaatttttggatgaaaaaccataaattgctattttaattttctaattataaggattggatgaataaagttgtttatcaaattaaataaattta |
18114377 |
T |
|
| Q |
101 |
gggattaatcacattttgtagcatcttatttttccttaattcttacaccaatgttgctttttggtgagagatttggaaaatttagttttgaataagnnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18114378 |
gggattaatcacattttgtagcatcttatttttccttaattcttacaccaatgttgctttttagtgagagatttggaaaatttagttttgaataagtttt |
18114477 |
T |
|
| Q |
201 |
nnnnnnnnnnnnnatgattctaagatttcaaaaatattaatacaaatagttcaagtatttggccatattcgtcaacaaacggatgtttttagttttctac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
18114478 |
tttcttttcttttatgattctaagatttcaaaaatattaatacaaatagttgaagtatttggc------------caaatggatgtttttagttttctac |
18114565 |
T |
|
| Q |
301 |
ctaccttaagttatttctctgtatcaaattatttaaatgtgcttgcaggtttgaggtgtttgaccatgccaagtttgatgattgggtggagaagggggta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18114566 |
ctaccttaagttatttctctgtatcaaattttttaaatttgcttgcaggtttgaggtgtttgaccatgccaagtttgatgattgggtggagaagggggta |
18114665 |
T |
|
| Q |
401 |
gcaccagccatagaagccagtttaaagctttatg |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18114666 |
gcaccagccatagaagccagtttaaagctttatg |
18114699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 18083891 - 18083988
Alignment:
| Q |
337 |
atgtgcttgcaggtttgaggtgtttgaccatgccaagtttgatgattgggtggagaagggggtagcaccagccatagaagccagtttaaagctttatg |
434 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||| || ||||||| ||||||| |
|
|
| T |
18083891 |
atgtgcttgcaggtttgaggtttttgaccatgcaaagtttgaatattgggtggagaagggtgtagcaccagccatagaaacctgtttaaaactttatg |
18083988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 337 - 434
Target Start/End: Original strand, 18099359 - 18099456
Alignment:
| Q |
337 |
atgtgcttgcaggtttgaggtgtttgaccatgccaagtttgatgattgggtggagaagggggtagcaccagccatagaagccagtttaaagctttatg |
434 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
18099359 |
atgtgcttgtaggtttgaggtttttgaccatgcaaagtttgatgattgggcggagaagggtgtagcaccagccataaaactcagtttaaaactttatg |
18099456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University