View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5639_low_8 (Length: 299)
Name: NF5639_low_8
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 292
Target Start/End: Complemental strand, 32227482 - 32227202
Alignment:
| Q |
12 |
cacactttcatctttctcagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaagtcatc |
111 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227482 |
cacactttcatctttcttagtaccaaaatggaggaacccaccttcctagtaaccatgttagtgcccttcatatgtagaaatgacctcaatagaagtcatc |
32227383 |
T |
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| Q |
112 |
aagtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcatttgag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32227382 |
aagtgacagattctcaacagagccaaatgtttcaactgatccaattcttgagtagtttgtcattgatccacccaaaaaatcaagtggtgaatcatttgag |
32227283 |
T |
|
| Q |
212 |
atggttgtgtcatatataaatgacatgcttgtatcattcattgcaggataagctacatcaaagcaacttttgttcatctca |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32227282 |
atggttgtgtcatatataaatgacatgcttgtatcattcattgcaggataagctacatcaaagcaacttttgttcacctca |
32227202 |
T |
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