View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5639_low_9 (Length: 295)
Name: NF5639_low_9
Description: NF5639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5639_low_9 |
 | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 1967087 - 1966823
Alignment:
| Q |
11 |
cagagactatcattgtcacaacatctaaaaacatggtagcatatatatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataa |
110 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1967087 |
cagaaactatcattgtcgcaacatctaaaaacatggtagcatatatatttctcaactacaaatgagttgcacaggaatacaccataaacacaagcgataa |
1966988 |
T |
|
| Q |
111 |
ctatcaacctttgaaaatatattggctatatatttcaattttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctat |
210 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1966987 |
ctatcaacctttaaaaatacattggttatatatttcaattttgataaatcaaaccaattttatctaccgtctatattttgatcactattccaaactctat |
1966888 |
T |
|
| Q |
211 |
acaaaagtatcaatattaaagtcattgactccaaaatttccacaaaattcatacatacacatgtc |
275 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1966887 |
acaaaagtattaatattaaagtcattgactccaaaatttccacaaaattcatacatacacatgtc |
1966823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 275
Target Start/End: Original strand, 8990785 - 8991049
Alignment:
| Q |
11 |
cagagactatcattgtcacaacatctaaaaacatggtagcatatatatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataa |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||| |
|
|
| T |
8990785 |
cagagagtatcattgtcacaacatctaaaaacatggtagcatatgtatttctcaactacaaatgagttgctcaagaatacaccataaacacaagcgataa |
8990884 |
T |
|
| Q |
111 |
ctatcaacctttgaaaatatattggctatatatttcaattttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctat |
210 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8990885 |
ctatcaacctttgaaaatacattgactatatatttcaattttgataaatcaaaccaattttatctaccgtctatattttgatcactattccaaactctat |
8990984 |
T |
|
| Q |
211 |
acaaaagtatcaatattaaagtcattgactccaaaatttccacaaaattcatacatacacatgtc |
275 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8990985 |
acaaaagtattaatattaaagtcactgactccaaaatttccacaaaattcatacatacacatgtc |
8991049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 169
Target Start/End: Original strand, 6951591 - 6951749
Alignment:
| Q |
11 |
cagagactatcattgtcacaacatctaaaaacatggtagcatatatatttctcaactacaaaagagttgcacaggaatacaccataaacacaagcgataa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951591 |
cagaaactatcattgtcacaacatctaaaaacatggtagcatatatatttctcaactacaaatgagttgcacaggaatacaccataaacacaagcgataa |
6951690 |
T |
|
| Q |
111 |
ctatcaacctttgaaaatatattggctatatatttcaattttgataaatcaaaccaatt |
169 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6951691 |
ctatcaacctttgaaaatacattggctatatatttcaattttgataaatcaaaccaatt |
6951749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 6951768 - 6951810
Alignment:
| Q |
16 |
actatcattgtcacaacatctaaaaacatggtagcatatatat |
58 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6951768 |
actatcattgtcacatcatctaaaaacatggtagcatatatat |
6951810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 148 - 272
Target Start/End: Complemental strand, 31181808 - 31181684
Alignment:
| Q |
148 |
attttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagtatcaatattaaagtcattgactccaaaat |
247 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||||||||| |||||||| |||||||||| | |||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
31181808 |
attttgacaaaccaaaccaattttatctgatgtctatattctgatcactattccaaactcaagacaaaagtattaatataaaggtcattgactccaaaat |
31181709 |
T |
|
| Q |
248 |
ttccacaaaattcatacatacacat |
272 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31181708 |
ttccacaaaattcatacatacacat |
31181684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 111249 - 111179
Alignment:
| Q |
148 |
attttgataaatcaaaccaattatatctaccgtctatattttgatcactcttccaaactctatacaaaagt |
218 |
Q |
| |
|
||||||| ||| |||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
111249 |
attttgacaaaccaaaccaattttatctaccgtctatattttgatcactattccaaactctatgcaaaagt |
111179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University