View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640-Insertion-2 (Length: 865)
Name: NF5640-Insertion-2
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 384 - 662
Target Start/End: Original strand, 13728657 - 13728935
Alignment:
| Q |
384 |
atggcataaaactatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccatcctttatcagc |
483 |
Q |
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| T |
13728657 |
atggtataaaattatgaaactccttgatgagggacctaacagtgtgtaccaaagtatgggaatctgactcaaatatcttgttgtcccaacctttatcagc |
13728756 |
T |
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| Q |
484 |
agctaaaccaatagcggtttgggtttgagtgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
583 |
Q |
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| T |
13728757 |
agctaaaccaatagcggtttgggtttgagcgagtctagacttgggtagttactgacaaatttgaaatcaatgtcaaaaattaagatttccctttaagatt |
13728856 |
T |
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| Q |
584 |
tcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaacttttaaattata |
662 |
Q |
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| T |
13728857 |
tcaatgccaaaaattgttctagattttaaattattcttgagatttcaatgccaaaaattgttctaaattttaaattata |
13728935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 654 - 865
Target Start/End: Original strand, 13729311 - 13729522
Alignment:
| Q |
654 |
taaattatacttaagatttcattttgattgggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
753 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13729311 |
taaattatacttaagatttcattttgatttggtcataaagatttcattgtgtaaaacacagatttttgagctttttaaatctaagctaatttccaccgtg |
13729410 |
T |
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| Q |
754 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
853 |
Q |
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| T |
13729411 |
tcatgcatattccaatatttttagttatgaatttaaagttggacttgcatgtgttccacatatgactattacaagtgatagatgggcgagtcgttgtctt |
13729510 |
T |
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| Q |
854 |
cggatgtttagt |
865 |
Q |
| |
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|||||||||||| |
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| T |
13729511 |
cggatgtttagt |
13729522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 172; E-Value: 6e-92
Query Start/End: Original strand, 163 - 385
Target Start/End: Original strand, 13726980 - 13727204
Alignment:
| Q |
163 |
caccaacatcgagcatttcaatagaaggaagaacaacaatgccaacttggggaaannnnnnn-atattgtagcaaaagatgttcaatacaaggaggataa |
261 |
Q |
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| T |
13726980 |
caccaacatcgagcatttcaatagaaggaaggacaacaatgccaacttggggaaactttttttatattgtagcaaaagatgttcaatacaaggaggataa |
13727079 |
T |
|
| Q |
262 |
ttctcaaaaat-atggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataaacttcacgttaaagcta |
360 |
Q |
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||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13727080 |
ttctcaaaaattacggtgacaagaccaagaacaggtcgccgtagcaagactatgagcaagcgtgtttgtttgttgcctaataaacttcacgttaaagcta |
13727179 |
T |
|
| Q |
361 |
attcaatattaatagaagatataat |
385 |
Q |
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| T |
13727180 |
attcaatattaatagaagatataat |
13727204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 13726575 - 13726690
Alignment:
| Q |
8 |
aatagacataatgatattctaatcaatgaatccattgaacaaaaaagattgcaaagcatcaattgattgtgacctttccatgtaggatttagaccttttc |
107 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
13726575 |
aatagacataatgatattctaatcaatgaatgcattgaacaaaaaagatagcaaagcatcaagtgattgtgacctttccatgtaggattttgaccttttc |
13726674 |
T |
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| Q |
108 |
ctaatgtggtgtggca |
123 |
Q |
| |
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|||||||||||||||| |
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| T |
13726675 |
ctaatgtggtgtggca |
13726690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 623 - 674
Target Start/End: Original strand, 13728852 - 13728903
Alignment:
| Q |
623 |
agatttcaatgccaaaaattgttctaacttttaaattatacttaagatttca |
674 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
13728852 |
agatttcaatgccaaaaattgttctagattttaaattattcttgagatttca |
13728903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 49525056 - 49525120
Alignment:
| Q |
244 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaag |
308 |
Q |
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||||||||||||||| || |||||||||||||| ||| || |||||||||| |||| ||||||| |
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| T |
49525056 |
tcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaag |
49525120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 347
Target Start/End: Original strand, 8670176 - 8670279
Alignment:
| Q |
244 |
tcaatacaaggaggataattctcaaaaatatggggacaagaccaagaacaggtcgccgtagcaagactatgagcaagtgtgtttgtttgttgcctaataa |
343 |
Q |
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|||||||||||| || || ||||||| ||| || ||| || ||||||||||| |||| ||| |||| | ||||||| ||||||||||| |||||| || |
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| T |
8670176 |
tcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaa |
8670275 |
T |
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| Q |
344 |
actt |
347 |
Q |
| |
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|||| |
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| T |
8670276 |
actt |
8670279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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