View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5640-Insertion-4 (Length: 802)

Name: NF5640-Insertion-4
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5640-Insertion-4
NF5640-Insertion-4
[»] chr3 (22 HSPs)
chr3 (9-802)||(2563278-2564073)
chr3 (95-154)||(29791775-29791834)
chr3 (85-160)||(55125999-55126074)
chr3 (92-160)||(48417867-48417935)
chr3 (85-161)||(53681870-53681946)
chr3 (95-158)||(47099038-47099101)
chr3 (85-123)||(30200856-30200894)
chr3 (107-160)||(7824800-7824853)
chr3 (91-127)||(20400103-20400139)
chr3 (85-152)||(26833622-26833689)
chr3 (91-142)||(31463495-31463546)
chr3 (85-152)||(39100409-39100476)
chr3 (85-152)||(54230092-54230159)
chr3 (90-148)||(1111839-1111897)
chr3 (89-123)||(8075815-8075849)
chr3 (89-123)||(20612274-20612308)
chr3 (89-127)||(41030191-41030229)
chr3 (89-123)||(45885474-45885508)
chr3 (86-155)||(35126263-35126332)
chr3 (85-154)||(37920991-37921060)
chr3 (72-158)||(46586181-46586263)
chr3 (106-147)||(49223040-49223081)
[»] chr4 (18 HSPs)
chr4 (91-156)||(3299093-3299158)
chr4 (92-155)||(19124622-19124685)
chr4 (85-132)||(49716932-49716979)
chr4 (92-154)||(18903758-18903820)
chr4 (85-160)||(7371541-7371616)
chr4 (90-145)||(35305244-35305299)
chr4 (94-137)||(39595939-39595982)
chr4 (88-160)||(21052553-21052625)
chr4 (85-160)||(17216122-17216197)
chr4 (91-154)||(41536921-41536984)
chr4 (94-153)||(52936641-52936700)
chr4 (89-127)||(10564462-10564500)
chr4 (89-123)||(43034339-43034373)
chr4 (113-158)||(2404702-2404747)
chr4 (90-127)||(2431023-2431060)
chr4 (90-123)||(22630358-22630391)
chr4 (90-123)||(37930845-37930878)
chr4 (90-163)||(39489596-39489669)
[»] chr2 (26 HSPs)
chr2 (90-160)||(29896292-29896362)
chr2 (93-154)||(40967372-40967433)
chr2 (85-125)||(19156157-19156197)
chr2 (85-160)||(24393238-24393313)
chr2 (89-127)||(12126895-12126933)
chr2 (85-127)||(15333155-15333197)
chr2 (90-135)||(24581015-24581060)
chr2 (98-159)||(35727431-35727492)
chr2 (85-153)||(12413493-12413561)
chr2 (85-153)||(12425553-12425621)
chr2 (85-156)||(10076871-10076942)
chr2 (89-128)||(10723964-10724003)
chr2 (93-160)||(37320518-37320585)
chr2 (91-154)||(43117189-43117252)
chr2 (90-152)||(5168577-5168639)
chr2 (89-127)||(22523009-22523047)
chr2 (93-127)||(32407564-32407598)
chr2 (85-123)||(34903547-34903585)
chr2 (90-160)||(42475108-42475178)
chr2 (98-127)||(231599-231628)
chr2 (83-160)||(8775263-8775340)
chr2 (90-123)||(9547407-9547440)
chr2 (109-154)||(22358042-22358087)
chr2 (86-123)||(22608557-22608594)
chr2 (89-122)||(35065625-35065658)
chr2 (86-159)||(39761432-39761504)
[»] chr1 (23 HSPs)
chr1 (85-160)||(6000136-6000211)
chr1 (89-154)||(41974760-41974825)
chr1 (107-159)||(31401668-31401720)
chr1 (94-160)||(18654815-18654881)
chr1 (90-155)||(30433506-30433571)
chr1 (109-154)||(47835732-47835777)
chr1 (91-147)||(4859089-4859145)
chr1 (91-159)||(17221519-17221587)
chr1 (90-154)||(24978243-24978307)
chr1 (92-151)||(1824662-1824721)
chr1 (90-129)||(15670640-15670679)
chr1 (85-160)||(19396184-19396259)
chr1 (94-153)||(34848476-34848535)
chr1 (93-148)||(35527923-35527978)
chr1 (90-153)||(51067892-51067955)
chr1 (90-160)||(3431323-3431393)
chr1 (105-159)||(8148378-8148432)
chr1 (85-123)||(11681253-11681291)
chr1 (85-123)||(22335388-22335426)
chr1 (90-127)||(9528023-9528060)
chr1 (98-163)||(26886371-26886436)
chr1 (91-152)||(34083338-34083399)
chr1 (109-154)||(40618909-40618954)
[»] chr7 (13 HSPs)
chr7 (85-159)||(22690029-22690103)
chr7 (85-153)||(10236898-10236966)
chr7 (93-160)||(35165526-35165593)
chr7 (98-160)||(38911292-38911354)
chr7 (95-130)||(34382939-34382974)
chr7 (85-160)||(41250040-41250115)
chr7 (104-154)||(429190-429240)
chr7 (90-160)||(25251503-25251573)
chr7 (85-155)||(48674561-48674631)
chr7 (95-160)||(34000255-34000320)
chr7 (104-160)||(34807211-34807268)
chr7 (89-150)||(45425456-45425517)
chr7 (93-146)||(46856088-46856141)
[»] chr5 (15 HSPs)
chr5 (92-154)||(7713531-7713593)
chr5 (85-159)||(27679492-27679566)
chr5 (95-160)||(40445976-40446041)
chr5 (85-160)||(30893926-30894001)
chr5 (106-160)||(34206220-34206274)
chr5 (85-159)||(35109394-35109468)
chr5 (88-127)||(3222757-3222796)
chr5 (94-129)||(11156861-11156896)
chr5 (85-152)||(31159430-31159497)
chr5 (107-154)||(36623189-36623236)
chr5 (85-123)||(35807734-35807772)
chr5 (110-159)||(7630194-7630243)
chr5 (85-154)||(11017175-11017244)
chr5 (107-156)||(18278274-18278323)
chr5 (93-154)||(40076960-40077024)
[»] chr6 (9 HSPs)
chr6 (90-159)||(9311928-9311997)
chr6 (92-159)||(7081654-7081721)
chr6 (85-156)||(30639419-30639490)
chr6 (106-161)||(31140826-31140881)
chr6 (94-160)||(2105898-2105964)
chr6 (86-156)||(19581444-19581514)
chr6 (85-155)||(28046171-28046241)
chr6 (95-160)||(8217376-8217441)
chr6 (90-159)||(8809300-8809369)
[»] chr8 (11 HSPs)
chr8 (98-158)||(10320491-10320551)
chr8 (90-154)||(28439958-28440022)
chr8 (109-160)||(10967205-10967256)
chr8 (94-153)||(36392824-36392883)
chr8 (89-159)||(6471505-6471575)
chr8 (85-123)||(27044883-27044921)
chr8 (95-160)||(1230664-1230729)
chr8 (89-154)||(3650519-3650584)
chr8 (91-152)||(13284264-13284325)
chr8 (92-129)||(18959173-18959210)
chr8 (90-147)||(30071514-30071571)
[»] scaffold0122 (1 HSPs)
scaffold0122 (90-154)||(14184-14248)
[»] scaffold0088 (1 HSPs)
scaffold0088 (107-154)||(48020-48067)
[»] scaffold0070 (1 HSPs)
scaffold0070 (106-160)||(42946-43000)
[»] scaffold0118 (1 HSPs)
scaffold0118 (86-123)||(40028-40065)


Alignment Details
Target: chr3 (Bit Score: 697; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 802
Target Start/End: Complemental strand, 2564073 - 2563278
Alignment:
Q  9 atatagagtatatacacactagatatgtatgattcttacgcgctatgcagataccgagaataatctttctttgatcgtgtccggggtttgaacctcaaac 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  2564073 atatagagtatatacacactagatatgtatgattcttacgcgctatgcagatacagagaataatctttctttgatcgtgtccggggtttgaacctcgaac 2563974  T
Q  109 cttgcatatattatgtattatttttatcatctgagttaaactcacggggacagataaagagaataatctctttgaggattaagctacgataatttaagaa 208  Q
    ||| ||||||||||  ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2563973 cttacatatattattcattatttttatcaactgagttaagctcacggggacagatagagagaataatctctttgaggattaagctacgataatttaagaa 2563874  T
Q  209 ttaattcttaaattatgaattttcatatgtatgagtcataaatcaaatatactcgaccatattgaaactgattttcaaataaagtgttttgacctacatg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  2563873 ttaattcttaaattatgaattttcatatgtatgagtcataaatcaaatatactcaaccatattgaaaatgattttcaaataaagtgttttgacctacatg 2563774  T
Q  309 aatttcactctatgaaagatcaagtattaaaaaagagtttaaattgaatattgttagcattgacctacatatatttaactacgtatgattgcatttcgga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563773 aatttcactctatgaaagatcaagtattaaaaaagagtttaaattgaatattgttagcattgacctacatatatttaactacgtatgattgcatttcgga 2563674  T
Q  409 aagnnnnnnnnnttatgtatggtttgtgtttcaatatatagtttaattttttcaatatgc-aaatatggagatcgatctatttaaagatttgaagtacat 507  Q
    |||         ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  2563673 aagaaaaaaaaattatgtatggtttgtgtttcaatatgtagtttaattttttcaatatgcaaaatatggagatcgatctatttaaagatttgaagtgcat 2563574  T
Q  508 ttgaagctcgtcctcccaaacagtcagctttgttatgcaagtcatcaattgaatatctaactacatactgtgggctgtttatcactcaaccaaatttagc 607  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563573 ttgaagcccgtcctcccaaacagtcagctttgttatgcaagtcatcaattgaatatctaactacatactgtgggctgtttatcactcaaccaaatttagc 2563474  T
Q  608 aagcaatatagtttaaacattaggaaaaaattacgaagaaattcacagatttgacaagtgcaatatttttatgatatatatgtctgccgttttaatttg- 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2563473 aagcaatatagtttaaacattaggaaaaaattacgaagaaattcacagatttgacaagtgcaatatttttatgatatatatgtctgccgttttaatttgt 2563374  T
Q  707 ttttcttgtgcccccgtttataaactttaattgctattgattaagacatacttggccatgtacagttgggttgacgagtgaatagataagatgggt 802  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2563373 ttttcttgtgcccccgtttataaactttaattgctattgattaagacatacttggccatgtacagttgggttgacaagtgaatagataagatgggt 2563278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 29791834 - 29791775
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||    
T  29791834 tttgaacctcaaaccttacatatattatgtattgtttctatcaactgagttaaactcacg 29791775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 55126074 - 55125999
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||| |||||||||||||| |||||||||||||||||||||| |  | |||| ||||| ||| ||||||||||||    
T  55126074 gtgtctggggtttgaacctcgaaccttgcatatattatgtattgtcctcatcaactgagctaagctcacggggaca 55125999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 48417867 - 48417935
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||| || |||||||||||||||||| ||||| |||| || |||||| || ||||||||||||    
T  48417867 gggtttgaacttcgaaccttgcatatattatgcattatatttaccaactgagtgaagctcacggggaca 48417935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 53681870 - 53681946
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggacag 161  Q
    |||||| ||||| |||||||||| ||||||||||||||| ||| || ||| || ||||| ||| |||||||||||||    
T  53681870 gtgtccagggttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgaggtaagctcacggggacag 53681946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 47099038 - 47099101
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgggga 158  Q
    |||||||| | |||||||||||||||||| |||||| |||||| ||||| ||| ||||||||||    
T  47099038 tttgaaccccgaaccttgcatatattatgcattattcttatcaactgagctaagctcacgggga 47099101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 30200894 - 30200856
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  30200894 gtgtccggggttcgaacctcaaaccttgcatatattatg 30200856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 7824853 - 7824800
Alignment:
Q  107 accttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||||||||||| | | ||||| |||||||||||||||| |||||    
T  7824853 accttgcatatattatgtattgtctatatcaactgagttaaactcacgaggaca 7824800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 20400139 - 20400103
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||| |||||||||||||||||||||    
T  20400139 ggggtttgaacctcagaccttgcatatattatgtatt 20400103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 26833622 - 26833689
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||| |||||||| ||| ||||||| | ||||||||||| | |||| |||||| ||||||||||||||    
T  26833622 gtgttcggggtttaaacatcaaaccctacatatattatgcaatattgttatcaactgagttaaactca 26833689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Complemental strand, 31463546 - 31463495
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctga 142  Q
    ||||||||||||||| ||||| ||||||||||| ||||||| ||||| ||||    
T  31463546 ggggtttgaacctcagaccttacatatattatgcattatttctatcaactga 31463495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 39100409 - 39100476
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||||||||  | ||||||||||||||| |||||||||| ||| || |||||| ||||||||| ||||    
T  39100409 gtgtccgggtatcgaacctcaaaccttgtatatattatgcattgttcttatcaactgagttaagctca 39100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 54230092 - 54230159
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||||||||||| ||||| |||||||||||||||||||| ||| |  ||| || ||||| ||||||||    
T  54230092 gtgtccggggttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaaactca 54230159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 1111839 - 1111897
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaa 148  Q
    ||||||||||||| || ||||||||||||||||||||| |   ||||| ||||||||||    
T  1111839 cggggtttgaaccccagaccttgcatatattatgtattgtccctatcaactgagttaaa 1111897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 8075849 - 8075815
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatg 123  Q
    ||||||||||||||||| |||||||||||||||||    
T  8075849 ccggggtttgaacctcagaccttgcatatattatg 8075815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 20612274 - 20612308
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||||| ||||||||||||||||||||    
T  20612274 ccggggtttgaaccccaaaccttgcatatattatg 20612308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 41030229 - 41030191
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  41030229 ccggagtttgaacctcaaaccttgcatattttatgtatt 41030191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 45885474 - 45885508
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatg 123  Q
    ||||||||||||||||| |||||||||||||||||    
T  45885474 ccggggtttgaacctcagaccttgcatatattatg 45885508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 35126263 - 35126332
Alignment:
Q  86 tgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgg 155  Q
    |||||||| |||||||| || | ||||||||||||||| |||||   || || |||||||||||||||||    
T  35126263 tgtccgggatttgaaccccagatcttgcatatattatgcattatccctaccaactgagttaaactcacgg 35126332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 37920991 - 37921060
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||| |||||||| || || |||||||||||||| |||||   ||||| ||||| ||||||||||    
T  37920991 gtgtccgggatttgaaccgcagacattgcatatattatgcattatccctatcaactgagctaaactcacg 37921060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 46586181 - 46586263
Alignment:
Q  72 tctttctttgatcgtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgggga 158  Q
    ||||| |||| | ||||| |||||| ||||| |||||||| ||||||| |||||||    ||| || ||||||||||||||||||||    
T  46586181 tctttttttggtagtgtctggggttcgaaccccaaaccttacatatatcatgtatt----ttaccaactgagttaaactcacgggga 46586263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 49223040 - 49223081
Alignment:
Q  106 aaccttgcatatattatgtattatttttatcatctgagttaa 147  Q
    |||||||||||||||||| ||||||||||||| |||| ||||    
T  49223040 aaccttgcatatattatgcattatttttatcaactgaattaa 49223081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 91 - 156
Target Start/End: Original strand, 3299093 - 3299158
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggg 156  Q
    ||||||||||||||||||||||||||||||||| ||| |||| | || ||||||||||||||||||    
T  3299093 ggggtttgaacctcaaaccttgcatatattatgcattgttttaaccaactgagttaaactcacggg 3299158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 19124622 - 19124685
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgg 155  Q
    ||||| |||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  19124622 gggttcgaacctcagaccttgcatatattatgtattgtctttatcaactgagttaagctcacgg 19124685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 49716932 - 49716979
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttt 132  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||    
T  49716932 gtgtccggggttagaacctcaaaccttgcatatattatgcattatttt 49716979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 18903758 - 18903820
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||| || ||||| ||||||||||| ||||||||||||| ||||| ||||||||||    
T  18903758 gggtttgaaccccagaccttacatatattatgcattatttttatcaactgagctaaactcacg 18903820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 7371541 - 7371616
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||| ||||| |  ||||||||||||||||||||| |  |||||| ||||||||| ||||||| ||||    
T  7371541 gtgtccggggttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctcacggagaca 7371616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 145
Target Start/End: Complemental strand, 35305299 - 35305244
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagtt 145  Q
    |||||||||||| |||||||||||||||||| || ||||||| ||||| |||||||    
T  35305299 cggggtttgaacttcaaaccttgcatatattgtgcattatttctatcaactgagtt 35305244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 39595939 - 39595982
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatca 137  Q
    |||||||||||| ||||||||||||||||||||||||| |||||    
T  39595939 gtttgaacctcagaccttgcatatattatgtattatttatatca 39595982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 160
Target Start/End: Original strand, 21052553 - 21052625
Alignment:
Q  88 tccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||| || |||||||| |||||||||||||||||||||||   || || ||||| |||||||||| |||||    
T  21052553 tccgggattcgaacctcataccttgcatatattatgtattatccataccaactgagctaaactcacgaggaca 21052625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 17216122 - 17216197
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||| |||||| |||| ||| ||||||||||||||||| |||||| |||||| ||||| | | |||||| |||||    
T  17216122 gtgtctggggttcgaacttcagaccttgcatatattatgcattattcttatcaactgagcttagctcacgtggaca 17216197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 41536984 - 41536921
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    |||||| |||| || |||||||||||||||||||||| |  ||||||  |||||||||||||||    
T  41536984 ggggttcgaacttcgaaccttgcatatattatgtattgtccttatcaattgagttaaactcacg 41536921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 52936700 - 52936641
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||||||||||||||||| ||||||||||  ||| ||| ||||| ||||||||| |||||    
T  52936700 gtttgaacctcaaaccttacatatattatacattgtttctatcaactgagttaagctcac 52936641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 10564462 - 10564500
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  10564462 ccggggtttgaacctcagaccttacatatattatgtatt 10564500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 123
Target Start/End: Original strand, 43034339 - 43034373
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatg 123  Q
    ||||||||||||||||| |||||||||||||||||    
T  43034339 ccggggtttgaacctcagaccttgcatatattatg 43034373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 2404747 - 2404702
Alignment:
Q  113 catatattatgtattatttttatcatctgagttaaactcacgggga 158  Q
    ||||||||||| |||||| ||||||| ||||||||| |||||||||    
T  2404747 catatattatgcattattcttatcatttgagttaaattcacgggga 2404702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 2431060 - 2431023
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  2431060 cggggtttgaacctcataccttgcatattttatgtatt 2431023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 22630358 - 22630391
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||||||| |||||||||||||||||    
T  22630358 cggggtttgaacctcagaccttgcatatattatg 22630391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 37930845 - 37930878
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||||||| |||||||||||||||||    
T  37930845 cggggtttgaacctcagaccttgcatatattatg 37930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 39489669 - 39489596
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggacagat 163  Q
    ||||||||||||| | ||||||||||||| |||||||| ||  ||||| |||| |||| |||||  ||||||||    
T  39489669 cggggtttgaaccccgaaccttgcatatactatgtattgttcctatcaactgaattaagctcacaaggacagat 39489596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 29896292 - 29896362
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||| |||||||||||||||||||| ||| ||| ||||| |||| ||||||||||| |||||    
T  29896292 cggggtttgaaccccaaaccttgcatatattatgcattgtttctatcaactgaattaaactcacgaggaca 29896362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 40967372 - 40967433
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||||||||||||||||| ||| |  |||||| ||||||||| ||||||    
T  40967372 ggtttgaacctcaaaccttgcatatattatgcattgtccttatcaactgagttaagctcacg 40967433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 19156157 - 19156197
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgta 125  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  19156157 gtgtctggggtttgaacctcaaaccttgcatatattatgta 19156197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 24393313 - 24393238
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||| |||||||| ||||||||||||||||| ||| |  ||| || ||||| ||| ||||||||||||    
T  24393313 gtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaagctcacggggaca 24393238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 12126933 - 12126895
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  12126933 ccggggtttgaacctcaaaccttacatatattatgtatt 12126895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 15333197 - 15333155
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  15333197 gtgtcaggggtttgaacatcaaaccttgcatatattatgtatt 15333155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 24581015 - 24581060
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttat 135  Q
    ||||||||||||||| |||||||||||||||||| ||| |||||||    
T  24581015 cggggtttgaacctcgaaccttgcatatattatgcattgtttttat 24581060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 35727492 - 35727431
Alignment:
Q  98 gaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    ||||| |||||||||||||||||||| ||| || ||| || ||||||||| |||||||||||    
T  35727492 gaaccccaaaccttgcatatattatgcattgttcttaccaactgagttaagctcacggggac 35727431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 12413561 - 12413493
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||| |||||||||||||||| ||||||||||||||||| ||| |  |||||| | ||| |||||||||    
T  12413561 gtgtacggggtttgaacctcagaccttgcatatattatgcattgtccttatcaaccgagataaactcac 12413493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 12425621 - 12425553
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||| |||||||||||||||| ||||||||||||||||| ||| |  |||||| | ||| |||||||||    
T  12425621 gtgtacggggtttgaacctcagaccttgcatatattatgcattgtccttatcaaccgagataaactcac 12425553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 10076942 - 10076871
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggg 156  Q
    |||| |||||||||||||||| | | ||||||||||||||||| | ||||||| || ||||||  |||||||    
T  10076942 gtgttcggggtttgaacctcagatcatgcatatattatgtattgtctttatcagctaagttaagttcacggg 10076871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 10724003 - 10723964
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtatta 128  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  10724003 ccggggtttgaacctcagaccttgcatatattatgcatta 10723964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 37320518 - 37320585
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||| ||||||| |||||||||||||||||| ||| | |||| || ||||||||| |||||| |||||    
T  37320518 ggttcgaacctcgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacgtggaca 37320585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 43117189 - 43117252
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||| ||||||||||||||||| ||| |  ||| || ||||| ||||||||||    
T  43117189 ggggtttgaacctcagaccttgcatatattatgcattgtccttaccaactgagctaaactcacg 43117252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 5168577 - 5168639
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    ||||||||||||| | |||||||||||||||||| |||||   ||||| ||||||||| ||||    
T  5168577 cggggtttgaaccccgaaccttgcatatattatgcattatccctatcaactgagttaagctca 5168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 127
Target Start/End: Original strand, 22523009 - 22523047
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  22523009 ccgggatttgaacctcgaaccttgcatatattatgtatt 22523047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 127
Target Start/End: Original strand, 32407564 - 32407598
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||||||| |||||||||||||||    
T  32407564 ggtttgaacctcaaaccttacatatattatgtatt 32407598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 34903585 - 34903547
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  34903585 gtgtccggggttcgaacctcagaccttgcatatattatg 34903547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 42475108 - 42475178
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||| |||||||| ||||||||||| ||||| ||| ||| || || ||||||||| |||||| |||||    
T  42475108 cggggttcgaacctcagaccttgcatattttatgcattgtttataccaactgagttaagctcacgaggaca 42475178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 127
Target Start/End: Original strand, 231599 - 231628
Alignment:
Q  98 gaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||||||||||||||||||    
T  231599 gaacctcaaaccttgcatatattatgtatt 231628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 8775340 - 8775263
Alignment:
Q  83 tcgtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||| |||||| |||||| ||| ||| ||||||||||||||||||  ||||| ||||  ||| |||||| |||||    
T  8775340 tcgtgtctggggttcgaaccttaaatcttacatatattatgtattattcctatcaactgacctaagctcacgaggaca 8775263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 9547407 - 9547440
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatg 123  Q
    ||||||||||||| ||||||||||||||||||||    
T  9547407 cggggtttgaaccccaaaccttgcatatattatg 9547440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 22358042 - 22358087
Alignment:
Q  109 cttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    |||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  22358042 cttgcatatactatgcattatttttatcaactgagttaagctcacg 22358087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 22608594 - 22608557
Alignment:
Q  86 tgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  22608594 tgtctggggtttgaacctcataccttgcatatattatg 22608557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 35065625 - 35065658
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattat 122  Q
    |||||||||||||||| |||||||||||||||||    
T  35065625 ccggggtttgaacctcgaaccttgcatatattat 35065658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 39761504 - 39761432
Alignment:
Q  86 tgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||  |||| || ||||||||||||||||| ||| |  |||||| ||||| |||||||||||||||    
T  39761504 tgtccggggttcaaacc-cagaccttgcatatattatgcattgtccttatcaactgagctaaactcacggggac 39761432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 6000136 - 6000211
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||||||||||  ||||||||||||||||| ||| |  | | || ||||||||||||||||||||||    
T  6000136 gtgtccggggtttgaacctcggaccttgcatatattatgcattgtcctaaccaactgagttaaactcacggggaca 6000211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 41974825 - 41974760
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||||||||||||||||||||| |||||   ||||| ||||  ||||||||||    
T  41974825 ccggggtttgaacctcaaaccttgcatatattatgcattatccctatcaactgaactaaactcacg 41974760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Original strand, 31401668 - 31401720
Alignment:
Q  107 accttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    ||||||||||||||||| ||| ||||| ||| |||||||||||||||||||||    
T  31401668 accttgcatatattatgcattgtttttgtcaactgagttaaactcacggggac 31401720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 18654881 - 18654815
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||  | || |||||||||| |||||    
T  18654881 gtttgaaccacaaaccttgcatatattatgtattttttctatcaattaagctaaactcacgaggaca 18654815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 30433506 - 30433571
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgg 155  Q
    |||| ||| ||||||||| |||| |||||||||||||||| | ||||| |||||||||||| ||||    
T  30433506 cgggatttaaacctcaaatcttgtatatattatgtattatctctatcaactgagttaaacttacgg 30433571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 47835732 - 47835777
Alignment:
Q  109 cttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    |||| |||||||||||||| ||||||||| ||||||||||||||||    
T  47835732 cttgtatatattatgtattgtttttatcaactgagttaaactcacg 47835777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 4859145 - 4859089
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaa 147  Q
    |||||| ||||| || ||||| |||||||||||||||||| |||||| |||||||||    
T  4859145 ggggttcgaaccccagaccttacatatattatgtattattcttatcaactgagttaa 4859089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 17221519 - 17221587
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||| |||||||  ||||||||||||||||| ||| || ||| || || ||||||||||||||||||    
T  17221519 ggggttcgaacctcggaccttgcatatattatgcattgttcttaccaacttagttaaactcacggggac 17221587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 24978307 - 24978243
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    |||| ||||||||  ||||||||||||||||||||||||| | || || ||||||||| ||||||    
T  24978307 cgggatttgaaccctaaaccttgcatatattatgtattatctataccaactgagttaagctcacg 24978243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 1824721 - 1824662
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactc 151  Q
    ||||| ||||| | |||||||||||||||||||||| ||| | ||| |||||||||||||    
T  1824721 gggttcgaaccacgaaccttgcatatattatgtattgtttctgtcaactgagttaaactc 1824662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 129
Target Start/End: Original strand, 15670640 - 15670679
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattat 129  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  15670640 cggggtttgaaccccaaaccttacatatattatgtattat 15670679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 19396184 - 19396259
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||| ||  ||| ||||||||||||||||||||| |||||   || || ||||||||||||||||| ||||    
T  19396184 gtgtccgggattcaaacatcaaaccttgcatatattatgcattatccctaccaactgagttaaactcacggagaca 19396259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 34848535 - 34848476
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||||||||||| ||||||||||||||||| ||| | ||| ||| || ||||||||||||    
T  34848535 gtttgaacctcagaccttgcatatattatgaattgtctttgtcaactaagttaaactcac 34848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 35527978 - 35527923
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaa 148  Q
    |||| ||||| ||||||||  |||||||||| ||||||||||||| ||||||||||    
T  35527978 ggttcgaaccccaaaccttatatatattatgcattatttttatcaactgagttaaa 35527923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 51067892 - 51067955
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||| |||||||| | | ||||||||||||||||||||||| ||| || ||||||||| |||||    
T  51067892 cgggatttgaaccccgagccttgcatatattatgtattattcttaccaactgagttaagctcac 51067955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 3431393 - 3431323
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||||||  || |||||||||||||| ||| ||  || || |||||||||||||||| |||||    
T  3431393 cggggtttgaacctcgtacattgcatatattatgcattcttcctaccaactgagttaaactcacgaggaca 3431323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 8148378 - 8148432
Alignment:
Q  105 aaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    ||||||||||||||||||||||| || ||| || ||||| ||| |||||||||||    
T  8148378 aaaccttgcatatattatgtattgttcttaccaactgagctaagctcacggggac 8148432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 11681291 - 11681253
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||||||||||||||| || |||||||||||||||||    
T  11681291 gtgtccggggtttgaaccccagaccttgcatatattatg 11681253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 22335426 - 22335388
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  22335426 gtgttcggggtttgaacctcagaccttgcatatattatg 22335388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9528060 - 9528023
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  9528060 cggggtttgaacctcgaaccttgcatattttatgtatt 9528023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 26886371 - 26886436
Alignment:
Q  98 gaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggacagat 163  Q
    |||||||| |||||| |||||||||||||||||   |||| |||||||||  ||||||||| ||||    
T  26886371 gaacctcataccttgtatatattatgtattattcccatcaactgagttaagttcacggggatagat 26886436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 34083399 - 34083338
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||||| ||||| |||||||| ||||||||||| ||| || ||| |||||||||||| ||||    
T  34083399 ggggttcgaaccccaaaccttacatatattatgcattgttcttaccatctgagttaagctca 34083338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 40618954 - 40618909
Alignment:
Q  109 cttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||| ||||| |||| || ||||||||||||||||    
T  40618954 cttgcatatattatgcattatctttaccaactgagttaaactcacg 40618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 22690029 - 22690103
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||| ||| || ||||| ||| |||||| ||||    
T  22690029 gtgtccggggttcgaaccccaaaccttgcatatattatgcattattcttagcaactgagctaagctcacgaggac 22690103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 10236898 - 10236966
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    |||||||||||| ||||||| ||||||||||| |||||| ||| || ||| || |||||||||||||||    
T  10236898 gtgtccggggttcgaacctcgaaccttgcatacattatgcattgttcttaccaactgagttaaactcac 10236966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 35165593 - 35165526
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||| |||||||| ||||| ||||||||||||||| |  |||||| ||||||||||||||||| ||||    
T  35165593 ggttcgaacctcagaccttacatatattatgtattgtcgttatcaactgagttaaactcacggagaca 35165526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 38911354 - 38911292
Alignment:
Q  98 gaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||| ||||||||||||||||||||  ||| | ||||||| ||||||||| ||||||||||||    
T  38911354 gaacttcaaaccttgcatatattatacattgtctttatcaactgagttaagctcacggggaca 38911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 130
Target Start/End: Original strand, 34382939 - 34382974
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatt 130  Q
    |||||| |||||||||||||||||||||||||||||    
T  34382939 tttgaatctcaaaccttgcatatattatgtattatt 34382974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 41250040 - 41250115
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||| ||||| |||||||||  ||||||||||||||||  ||| || |||||| ||||| |||||||| |||||||    
T  41250040 gtgttcggggcttgaacctcggaccttgcatatattatacattgttcttatcaactgagctaaactcatggggaca 41250115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 429190 - 429240
Alignment:
Q  104 caaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||||||||||||   ||||| ||||||||| ||||||    
T  429190 caaaccttgcatatattatgtattatccatatcaactgagttaagctcacg 429240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 25251573 - 25251503
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||| ||||||||  |||||||||| ||| ||| || || ||||||||| ||||||| ||||    
T  25251573 cggggtttgaaccccaaaccttatatatattatgcattgtttataccaactgagttaagctcacggagaca 25251503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 48674561 - 48674631
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgg 155  Q
    |||||||||||||||||| ||| || ||||||||  ||| | |||  |||||| |||||||||||||||||    
T  48674561 gtgtccggggtttgaaccccaacccctgcatataaaatgcaatatccttatcaactgagttaaactcacgg 48674631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 34000320 - 34000255
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||| | |||||| ||||||||||| |||||  |||||| ||||||||| ||||||| ||||    
T  34000320 tttgaaccccgaaccttacatatattatgcattatccttatcaactgagttaagctcacggagaca 34000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 34807268 - 34807211
Alignment:
Q  104 caaaccttgcatatattatgtattatt-tttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||||||||||| ||| || ||||||| ||||| |||||||||| |||||    
T  34807268 caaaccttgcatatattatgcattgttctttatcaactgagctaaactcacgaggaca 34807211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 45425517 - 45425456
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaact 150  Q
    ||||| || ||||| | |||||||||||||||||| ||| | ||||||| ||||||||||||    
T  45425517 ccgggattcgaaccccgaaccttgcatatattatgcattgtctttatcaactgagttaaact 45425456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 46856141 - 46856088
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagtta 146  Q
    |||||||||||| ||| ||| |||||||||||||||||  ||||| ||||||||    
T  46856141 ggtttgaacctcgaactttgtatatattatgtattattcctatcaactgagtta 46856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Complemental strand, 7713593 - 7713531
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||  |||||||||||||||||||| ||||||  ||||| ||||||||||||||||    
T  7713593 gggtttgaactccaaaccttgcatatattatgcattattcatatcaactgagttaaactcacg 7713531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 27679566 - 27679492
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    ||||||||| |||||||| | |||||||||||||||||| ||||| |||| || ||||| ||| |||||||||||    
T  27679566 gtgtccgggatttgaaccccgaaccttgcatatattatgcattatctttaccaactgagctaagctcacggggac 27679492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 40446041 - 40445976
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||| ||||||||||||||||| ||| |  |||||| |||||||||||||||| |||||    
T  40446041 tttgaacctcagaccttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 30894001 - 30893926
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| | ||||  | ||||||||| |||||| |||||    
T  30894001 gtgtccgaggtttgaacctcataccttgcatatattatgcattgtctttacaaactgagttaagctcacgaggaca 30893926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 34206274 - 34206220
Alignment:
Q  106 aaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||||||||| ||| | |||| || ||||||||||||||||||||||    
T  34206274 aaccttgcatatattatgcattgtctttaccaactgagttaaactcacggggaca 34206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 35109468 - 35109394
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    ||||||||| || |||||||  ||||||||||||||||||||| | |||| || ||||||||| |||||| ||||    
T  35109468 gtgtccgggattcgaacctcggaccttgcatatattatgtattgtctttaccaactgagttaagctcacgtggac 35109394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 3222796 - 3222757
Alignment:
Q  88 tccggggtttgaacctcaaaccttgcatatattatgtatt 127  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  3222796 tccggggttcgaacctcagaccttgcatatattatgtatt 3222757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 11156896 - 11156861
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattat 129  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11156896 gtttgaacctcaaaccttgtatatattatgtattat 11156861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 31159497 - 31159430
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||||||||||| |||||   || ||||||||||||||||||| | ||||||| ||||||||| ||||    
T  31159497 gtgtccggggttcgaaccctgaatcttgcatatattatgtattgtctttatcaactgagttaagctca 31159430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 36623189 - 36623236
Alignment:
Q  107 accttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||| |||||| |||||| ||||||||| ||||||    
T  36623189 accttgcatatattatgcattattcttatcaactgagttaagctcacg 36623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 35807734 - 35807772
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  35807734 gtgttcggggttcgaacctcaaaccttgcatatattatg 35807772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 7630194 - 7630243
Alignment:
Q  110 ttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||||| ||| | |||| |||||||||||| |||||||||||    
T  7630194 ttgcatatattatgcattgtctttagcatctgagttaagctcacggggac 7630243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 11017244 - 11017175
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||   || || ||||| ||||||||||    
T  11017244 gtgtccgggattcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaaactcacg 11017175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 18278274 - 18278323
Alignment:
Q  107 accttgcatatattatgtattatttttatcatctgagttaaactcacggg 156  Q
    ||||||||||||||||| ||| || ||| || ||||||||||||||||||    
T  18278274 accttgcatatattatgcattgttcttaccaactgagttaaactcacggg 18278323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 40076960 - 40077024
Alignment:
Q  93 ggtttgaacctcaaaccttgcatatatt-atg--tattatttttatcatctgagttaaactcacg 154  Q
    |||||||| | ||||||||||||||||| |||  |||||||||||||| ||||| ||||||||||    
T  40076960 ggtttgaaacccaaaccttgcatatatttatgcatattatttttatcaactgagctaaactcacg 40077024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 9311928 - 9311997
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||||||||| ||| ||||||||||||||||||  || || ||||||||| |||||| ||||    
T  9311928 cggggtttgaacctcaaatcttacatatattatgtattattcataccaactgagttaagctcacgaggac 9311997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 7081654 - 7081721
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||| ||||| | ||||||||||||||||||||| | ||||||| ||||| ||| |||||| ||||    
T  7081654 gggtttcaaccttagaccttgcatatattatgtattgtctttatcaactgagctaagctcacgaggac 7081721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 30639419 - 30639490
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggg 156  Q
    ||||||| | || |||||||| ||||||||||||||||| ||||||  || || ||||| ||||||||||||    
T  30639419 gtgtccgagattcgaacctcagaccttgcatatattatgcattattcctaccaactgagctaaactcacggg 30639490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 31140826 - 31140881
Alignment:
Q  106 aaccttgcatatattatgtattatttttatcatctgagttaaactcacggggacag 161  Q
    |||||||||||||||||  ||||| ||||||| ||||||||| |||||| ||||||    
T  31140826 aaccttgcatatattatacattatctttatcagctgagttaagctcacgaggacag 31140881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 2105964 - 2105898
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||| |||||| ||||||||||| ||| |||||| || | ||| |||||||||| |||||    
T  2105964 gtttgaacctcgaaccttacatatattatgcattgtttttaccaaccgagctaaactcacgaggaca 2105898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 19581514 - 19581444
Alignment:
Q  86 tgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggg 156  Q
    ||||||||||| ||| | |||||||||||||||||||||||  | |||||||  |||| ||| ||||||||    
T  19581514 tgtccggggttcgaatcacaaaccttgcatatattatgtatagtctttatcaattgagctaagctcacggg 19581444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 155
Target Start/End: Original strand, 28046171 - 28046241
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgg 155  Q
    |||| |||||||  ||||||||||||||||||||||||| ||| | ||||||| ||||  ||| |||||||    
T  28046171 gtgttcggggttcaaacctcaaaccttgcatatattatgcattgtctttatcaactgaactaagctcacgg 28046241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 8217441 - 8217376
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||| |||||||||||||||||||||| | | || || ||||| ||| |||||| |||||    
T  8217441 tttgaacctcgaaccttgcatatattatgtattgtgtctaccagctgagctaagctcacgaggaca 8217376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 8809369 - 8809300
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||||||  | ||||||||||||||| ||| |||||||||  |||  |||||||||| ||||    
T  8809369 cggggtttgaacctcggatcttgcatatattatgcattgtttttatcaattgaactaaactcacgaggac 8809300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 10320551 - 10320491
Alignment:
Q  98 gaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacgggga 158  Q
    |||||||| ||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||    
T  10320551 gaacctcataccttacatatattatgcattattcttatcaactgagctaaactcacgggga 10320491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 28440022 - 28439958
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||| || ||||| ||||||||||| ||||| ||||||| |||| |||||||||||    
T  28440022 cggggtttgaaccccagaccttacatatattatgcattatctttatcaactgaattaaactcacg 28439958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 10967256 - 10967205
Alignment:
Q  109 cttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||||| ||| || ||||||  |||||||||||||||||||||    
T  10967256 cttgcatatattatgcattgttcttatcaattgagttaaactcacggggaca 10967205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 36392824 - 36392883
Alignment:
Q  94 gtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcac 153  Q
    ||||||||| ||||||||||||||| ||| |||| | ||||||| ||||||||| |||||    
T  36392824 gtttgaaccacaaaccttgcatatactatctattgtctttatcaactgagttaagctcac 36392883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 6471575 - 6471505
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggac 159  Q
    |||||||||||||| | ||| |||||||||||||| ||| ||  ||||  |||||||||||||||| ||||    
T  6471575 ccggggtttgaaccccgaacattgcatatattatgcattgttcctatcggctgagttaaactcacgaggac 6471505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 123
Target Start/End: Original strand, 27044883 - 27044921
Alignment:
Q  85 gtgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    ||||||||||||||||||||| ||||| |||||||||||    
T  27044883 gtgtccggggtttgaacctcagaccttacatatattatg 27044921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 1230664 - 1230729
Alignment:
Q  95 tttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    ||||||||||||||||| ||||||||||| ||| ||  || || ||||||||||||| || |||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattgttcctaccaactgagttaaactcgcgaggaca 1230729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 3650584 - 3650519
Alignment:
Q  89 ccggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    |||||||||||||| | |||||| ||||||||||| ||| ||| || || ||||||||| ||||||    
T  3650584 ccggggtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacg 3650519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 13284264 - 13284325
Alignment:
Q  91 ggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactca 152  Q
    |||||||||||||||||||||  |||||||||  ||| ||  ||||| ||||||||||||||    
T  13284264 ggggtttgaacctcaaaccttatatatattatacattgttcatatcaactgagttaaactca 13284325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 18959210 - 18959173
Alignment:
Q  92 gggtttgaacctcaaaccttgcatatattatgtattat 129  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  18959210 gggtttgaacctcgaaccttgcatatattatgcattat 18959173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 30071514 - 30071571
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaa 147  Q
    ||||||| ||||||||||||||| |||||||||| ||| || |||||| || ||||||    
T  30071514 cggggttagaacctcaaaccttgtatatattatgcattgttcttatcaactaagttaa 30071571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 14184 - 14248
Alignment:
Q  90 cggggtttgaacctcaaaccttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||| || ||||||||||||||||| ||| ||  || || ||||||||||||||||    
T  14184 cggggtttgaaccacataccttgcatatattatgcattgttcataccaactgagttaaactcacg 14248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 48067 - 48020
Alignment:
Q  107 accttgcatatattatgtattatttttatcatctgagttaaactcacg 154  Q
    ||||||||||||||||| |||||  |||||| ||||||||||||||||    
T  48067 accttgcatatattatgcattatgcttatcaactgagttaaactcacg 48020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 42946 - 43000
Alignment:
Q  106 aaccttgcatatattatgtattatttttatcatctgagttaaactcacggggaca 160  Q
    |||||||||||||||||| |||||| |||||| ||||||||| || |||| ||||    
T  42946 aaccttgcatatattatgcattattcttatcaactgagttaagctaacggagaca 43000  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 40065 - 40028
Alignment:
Q  86 tgtccggggtttgaacctcaaaccttgcatatattatg 123  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  40065 tgtccgaggtttgaacctctaaccttgcatatattatg 40028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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