View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640-Insertion-5 (Length: 320)
Name: NF5640-Insertion-5
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640-Insertion-5 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 18685147 - 18685458
Alignment:
| Q |
8 |
agattggggctcacgtaatgtccttagcatcgcacttgatcataccatttatttttggaatgcctcggatagttccgggtctgaatttgtcactgtcgat |
107 |
Q |
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| T |
18685147 |
agattggggctcacgtaatgtccttagcatcgcacttgatcataccatttatttttggaatgcctcggatagttccgggtctgaatttgtcactgtcgat |
18685246 |
T |
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| Q |
108 |
gaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctg |
207 |
Q |
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| T |
18685247 |
gaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctg |
18685346 |
T |
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| Q |
208 |
ctaacaaacaggtaaataccgtttgtgttctttgtattcaccatagtgaacatcttcttcgttgtattgttttcaaagtggaaatggtttctaatatttt |
307 |
Q |
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| T |
18685347 |
ctaacaaacaggtaaataccgtttgtgttctttgtattcaccatagtgaacatcttcttcgttgtattgttttcaaagtggaaatggtttctaata-ttt |
18685445 |
T |
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| Q |
308 |
tcatgtttgtggt |
320 |
Q |
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| T |
18685446 |
tcatgtttgtggt |
18685458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 13119837 - 13119750
Alignment:
| Q |
138 |
tgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagctctgggataccgctgctaacaaacaggtaaata |
225 |
Q |
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| T |
13119837 |
tgggctcaagatggatgccatttagccgttgggttgaacaattcccttgttcaaatctgggatacaactgctaagaaacaggtaaata |
13119750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 225
Target Start/End: Complemental strand, 43527409 - 43527278
Alignment:
| Q |
94 |
ttgtcactgtcgatgaagaagagggtccggtcacaagtgtgtgttgggctccagatggacgccatttagccgttggattgacgaattcacatgttcagct |
193 |
Q |
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| T |
43527409 |
ttgtcactgtagatgatgatgatggtcctgtcacaagcgttagctgggcccccgatggtcgccatttagccattgggttgaacaactcccatgtccagct |
43527310 |
T |
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| Q |
194 |
ctgggataccgctgctaacaaacaggtaaata |
225 |
Q |
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| T |
43527309 |
ctgggataccactgcttgtaaacaggtaaata |
43527278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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