View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5640_high_10 (Length: 240)

Name: NF5640_high_10
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5640_high_10
NF5640_high_10
[»] chr4 (6 HSPs)
chr4 (19-228)||(56039336-56039545)
chr4 (132-213)||(31943850-31943929)
chr4 (132-212)||(9579535-9579615)
chr4 (132-212)||(9585230-9585310)
chr4 (132-222)||(29528347-29528437)
chr4 (174-223)||(4325218-4325267)
[»] chr8 (5 HSPs)
chr8 (132-215)||(30694188-30694271)
chr8 (132-222)||(23448851-23448941)
chr8 (133-213)||(9256075-9256155)
chr8 (132-213)||(28846223-28846304)
chr8 (133-162)||(13152837-13152866)
[»] chr2 (2 HSPs)
chr2 (132-223)||(28841020-28841111)
chr2 (174-216)||(23866730-23866772)
[»] chr3 (3 HSPs)
chr3 (132-223)||(55194656-55194747)
chr3 (132-193)||(3857342-3857403)
chr3 (132-213)||(22527176-22527263)
[»] chr7 (5 HSPs)
chr7 (136-223)||(9230097-9230189)
chr7 (159-213)||(26786706-26786760)
chr7 (174-223)||(25024037-25024086)
chr7 (132-169)||(25024072-25024109)
chr7 (132-170)||(28041604-28041642)
[»] chr1 (5 HSPs)
chr1 (132-202)||(9636749-9636819)
chr1 (141-224)||(49465574-49465656)
chr1 (132-170)||(40865023-40865061)
chr1 (135-222)||(52754226-52754306)
chr1 (174-222)||(32380047-32380095)
[»] chr6 (3 HSPs)
chr6 (133-169)||(30621172-30621208)
chr6 (132-203)||(8035898-8035969)
chr6 (133-170)||(25599053-25599090)
[»] chr5 (2 HSPs)
chr5 (141-194)||(3055132-3055185)
chr5 (132-169)||(27169272-27169309)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 228
Target Start/End: Original strand, 56039336 - 56039545
Alignment:
Q  19 tgtgcagcataggaatctattggttctcattagttcatgaagtcgttggcatttctatgactcactacaaaaaatgtggtattaatttagctttgtcgta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  56039336 tgtgcagcataggaatctattggttctcattagttcatgaagtcgttggcatttctatgactcgctacaaaaaatgtggtattaatttagctttgtcgta 56039435  T
Q  119 aattaaatgagttgtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  56039436 aattaaatgagttgtatatatagattttgatttatgtaagtattgagtatttctatgagtaatgagtgttggtttgggtgaatcatataatagtttattg 56039535  T
Q  219 ttaggagaat 228  Q
    ||||||||||    
T  56039536 ttaggagaat 56039545  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 31943929 - 31943850
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtt 213  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| |||  ||||||||||||||||| ||||||||||    
T  31943929 gtatatatagattttgatttatgtgagtattgagtatttttgtgagtattga--gttggtttgggtgaatggtataatagtt 31943850  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 9579615 - 9579535
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| | || || ||| | | |||||||| |||||||||    
T  9579615 gtatatatagattttgatttatgtaagtattgagtattttggtgagcattgggtattgatgtaggtgaatggtataatagt 9579535  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 9585310 - 9585230
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| | || || ||| | | |||||||| |||||||||    
T  9585310 gtatatatagattttgatttatgtaagtattgagtattttggtgagcattgggtattgatgtaggtgaatggtataatagt 9585230  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 29528347 - 29528437
Alignment:
Q  132 gtatatatagattttgatttatgt-aagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttag 222  Q
    |||||||||||||||||||| | |  ||||| |||||||| | |||||||| ||| ||| |||||||||||| |||||||||| || |||||    
T  29528347 gtatatatagattttgatttctatggagtatagagtatttctgtgagtaat-agtattgatttgggtgaatggtataatagttcatagttag 29528437  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 4325267 - 4325218
Alignment:
Q  174 tgagtaatgagtgttggtttgggtgaatgatataatagtttattgttagg 223  Q
    |||||| ||||| ||||||||| |||||| ||||||||||||| ||||||    
T  4325267 tgagtattgagtattggtttggatgaatggtataatagtttatagttagg 4325218  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 30694271 - 30694188
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagttta 215  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||| ||||||| |||| || |||||||||    
T  30694271 gtatatatagattttgatttatgtgagtattgagtatttttgtgagtattgagtattgatttgggttaatggtacaatagttta 30694188  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 23448941 - 23448851
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttag 222  Q
    |||||||||||||||||||| ||| || ||||||||||| |  ||||||||||| || |||||||||||||||||||||||| || |||||    
T  23448941 gtatatatagattttgatttctgtgagcattgagtatttatgagagtaatgagtatttgtttgggtgaatgatataatagttcatagttag 23448851  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 9256155 - 9256075
Alignment:
Q  133 tatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtt 213  Q
    |||||||||||||||||| |||| |||||||||||||| | |||||| ||| | |||||||||||||||| ||||||||||    
T  9256155 tatatatagattttgattgatgtgagtattgagtatttatgtgagtattgattattggtttgggtgaatggtataatagtt 9256075  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 28846304 - 28846223
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtt 213  Q
    |||||||||||||||||||| ||| |||||||| ||||| |||||||| |||||  |||||| |||||||| ||||||||||    
T  28846304 gtatatatagattttgatttctgtgagtattgactatttctatgagtattgagtaatggtttaggtgaatggtataatagtt 28846223  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 162
Target Start/End: Original strand, 13152837 - 13152866
Alignment:
Q  133 tatatatagattttgatttatgtaagtatt 162  Q
    ||||||||||||||||||||||||||||||    
T  13152837 tatatatagattttgatttatgtaagtatt 13152866  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 28841111 - 28841020
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttagg 223  Q
    |||| ||||||||||||||||||| |||||||||||||| | || ||| ||| | |||||||||||||||| |||||||||| || ||||||    
T  28841111 gtatgtatagattttgatttatgtgagtattgagtatttatgtgggtattgaatattggtttgggtgaatggtataatagttcatagttagg 28841020  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 23866772 - 23866730
Alignment:
Q  174 tgagtaatgagtgttggtttgggtgaatgatataatagtttat 216  Q
    |||||| ||||| |||||||||||||||| |||||||||||||    
T  23866772 tgagtattgagtattggtttgggtgaatggtataatagtttat 23866730  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 223
Target Start/End: Complemental strand, 55194747 - 55194656
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttagg 223  Q
    ||||||||||||||||||||||||  |||||||||||||   |||||| | ||  |||||||||||||||| |||||||||| || ||||||    
T  55194747 gtatatatagattttgatttatgtgggtattgagtatttccgtgagtattaagcattggtttgggtgaatggtataatagttcatagttagg 55194656  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 3857342 - 3857403
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggttt 193  Q
    |||||||||||||||||||| | | |||||||||||||||| ||| || ||||| |||||||    
T  3857342 gtatatatagattttgatttctatgagtattgagtatttttgtgaatattgagtattggttt 3857403  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 213
Target Start/End: Complemental strand, 22527263 - 22527176
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgag------taatgagtgttggtttgggtgaatgatataatagtt 213  Q
    |||||||||||||||||||| ||| |||||||||||||| | ||||      || ||||| ||| |||| ||||||||||||||||||    
T  22527263 gtatatatagattttgatttttgtgagtattgagtatttatgtgagtattactattgagtattgttttgagtgaatgatataatagtt 22527176  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 9230189 - 9230097
Alignment:
Q  136 atatagattttgatttatgtaagtattgagtatttttatgagta-----atgagtgttggtttgggtgaatgatataatagtttattgttagg 223  Q
    |||||||||||||||||||| |||||||||||||||| ||||||      ||||| |||||||| ||||||| |||||||||| || ||||||    
T  9230189 atatagattttgatttatgtgagtattgagtatttttgtgagtattgagttgagtattggtttgagtgaatggtataatagttcatagttagg 9230097  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 26786706 - 26786760
Alignment:
Q  159 tattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtt 213  Q
    |||||||||||||| |||||| ||| | |||||||||||||||| ||||||||||    
T  26786706 tattgagtatttttgtgagtattgaatattggtttgggtgaatggtataatagtt 26786760  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 25024086 - 25024037
Alignment:
Q  174 tgagtaatgagtgttggtttgggtgaatgatataatagtttattgttagg 223  Q
    |||||| ||||| |||||||||||||||| ||||||||||||| ||||||    
T  25024086 tgagtattgagtattggtttgggtgaatggtataatagtttatagttagg 25024037  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 25024109 - 25024072
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatt 169  Q
    |||||||||||||||||||||||| |||||||||||||    
T  25024109 gtatatatagattttgatttatgtgagtattgagtatt 25024072  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 28041604 - 28041642
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtattt 170  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  28041604 gtatatatacattttgatttatgtgagtattgagtattt 28041642  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 9636819 - 9636749
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatg 202  Q
    |||||||||||||||||||| ||| | |||||||||||||| |||||| ||| | ||||||| ||||||||    
T  9636819 gtatatatagattttgatttctgtgattattgagtatttttgtgagtattgattattggtttaggtgaatg 9636749  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 49465574 - 49465656
Alignment:
Q  141 gattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttagga 224  Q
    ||||||||||| ||| |||||||||||||| |||||| | ||||| ||||||||| | || | |||||||||| || |||||||    
T  49465574 gattttgattt-tgtgagtattgagtatttctatgagcattgagtattggtttggataaagggtataatagttcatagttagga 49465656  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 40865023 - 40865061
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtattt 170  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  40865023 gtatatataaattttgatttatgtgagtattgagtattt 40865061  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 52754226 - 52754306
Alignment:
Q  135 tatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatgatataatagtttattgttag 222  Q
    |||||| || ||||||||||| |||||||||||||||| ||||||       |||||||||||||||  |||||||||| || |||||    
T  52754226 tatatatatattgatttatgtgagtattgagtatttttgtgagta-------ttggtttgggtgaatagtataatagttcatagttag 52754306  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 32380047 - 32380095
Alignment:
Q  174 tgagtaatgagtgttggtttgggtgaatgatataatagtttattgttag 222  Q
    |||||| | ||| ||||||||||||||||||||||||||| || |||||    
T  32380047 tgagtattaagtattggtttgggtgaatgatataatagttcatagttag 32380095  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 30621208 - 30621172
Alignment:
Q  133 tatatatagattttgatttatgtaagtattgagtatt 169  Q
    |||||||||||||||||||||||||||||||||||||    
T  30621208 tatatatagattttgatttatgtaagtattgagtatt 30621172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 8035898 - 8035969
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttgggtgaatga 203  Q
    ||||||||||||||||| || | | |||||||||||||| |||||||| ||||| |||| || |||||||||    
T  8035898 gtatatatagattttgaattttatgagtattgagtatttctatgagtattgagtattggatttggtgaatga 8035969  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 25599090 - 25599053
Alignment:
Q  133 tatatatagattttgatttatgtaagtattgagtattt 170  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  25599090 tatatatagattttcatttctgtaagtattgagtattt 25599053  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 3055185 - 3055132
Alignment:
Q  141 gattttgatttatgtaagtattgagtatttttatgagtaatgagtgttggtttg 194  Q
    ||||||||||||||| |||||||||||||||| || ||| ||||| ||||||||    
T  3055185 gattttgatttatgtgagtattgagtatttttgtgcgtattgagtattggtttg 3055132  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 27169272 - 27169309
Alignment:
Q  132 gtatatatagattttgatttatgtaagtattgagtatt 169  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27169272 gtatatattgattttgatttatgtgagtattgagtatt 27169309  T

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