View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640_low_1 (Length: 505)
Name: NF5640_low_1
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640_low_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 505
Target Start/End: Complemental strand, 19402996 - 19402499
Alignment:
| Q |
8 |
gagcagaacctgtgcatactaaaaagaaatagcgaatacttgttgtcaaacatgtaggcacggccctatcgtttgacattcaattcttgaagaggtatag |
107 |
Q |
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| T |
19402996 |
gagcagaatcagtgcatactaaaaagaaattgcgaatacttgttgtcaaacatgtaggcacggccctatcgtttgacattcaattcttgaagaggtatag |
19402897 |
T |
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| Q |
108 |
tgtgccaaatatttcccataattcttgaagagaaaactgtgattatttcatgcaccaaatgtaccatgttaaaaagtaaggattatttgaaaatgcactg |
207 |
Q |
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| T |
19402896 |
tgtgccaaatatttcccataattcttgaagagaaaactgtgattatttcatgcaccaaatgtaccatgttaaaaagtaaggattatttgaaaatgcactg |
19402797 |
T |
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| Q |
208 |
taacacaaaccaattacaataattcaaaatgcactgtaacagcagatactataattcaaagacataaatacaattggttaaactctgtgataagtgataa |
307 |
Q |
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| T |
19402796 |
taacacaaaccaattacaataattcaaaatgcactgtaacagcagatactataattcaaagacgtaaatacaattggttaaactctgtgataagtgataa |
19402697 |
T |
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| Q |
308 |
cagttgtgttttttgcatgtttacttcttattttagaaccaaatttgctattttaacacaaaagagctgttgaagttgtacagaatcttcatcatgttac |
407 |
Q |
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| T |
19402696 |
cagttgtgttttttgcatgtttacttcttattttagaaccaaatttgctattttaacacaaaagagctgttgaagttgtacagaatcttcatcatgttac |
19402597 |
T |
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| Q |
408 |
tgataatgaagttaacactttttatgcaaattgtgaagtactggagagccatagaaatatggaacaatgcagcaaacagagatatattgtgcgccttt |
505 |
Q |
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| T |
19402596 |
tgataatgaagttaacactttttatgcaaattgtgaagtactggagagccatagaaatatggaacaatgcagcaaacagagatatattgtgcgccttt |
19402499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 19378135 - 19378082
Alignment:
| Q |
314 |
tgttttttgcatgtttacttcttattttagaaccaaatttgctattttaacaca |
367 |
Q |
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| T |
19378135 |
tgttttttgcatgtttacttcttattttgaaaccaaattttctattttaacaca |
19378082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 19458575 - 19458478
Alignment:
| Q |
263 |
tcaaagacataaatacaattggttaaactctgtgataagtgataacagttgtgttttttgcatgtttacttcttattttagaaccaaatttgctatttta |
362 |
Q |
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| T |
19458575 |
tcaaagacgtaaatacaatttgttaaactctgttatca------acagctctgttttttgcatatttacttcttatattgaaaccaaattttctatttta |
19458482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 340
Target Start/End: Complemental strand, 19353307 - 19353276
Alignment:
| Q |
309 |
agttgtgttttttgcatgtttacttcttattt |
340 |
Q |
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| T |
19353307 |
agttgtgttttttgcatgtttacttcttattt |
19353276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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