View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640_low_12 (Length: 226)
Name: NF5640_low_12
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 36640364 - 36640169
Alignment:
| Q |
13 |
caaaggaagagacagaagaaaagcgtggacaattctctcttgtagttggaggtttgttggttattgcatttgttgttcctatggtacaatactatgctta |
112 |
Q |
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| T |
36640364 |
caaaggaagagacagaagaaaagcgtggacaattctctcttgtagttggaggtttgttggttattgcatttgttgttcctatggtacaatactatgctta |
36640265 |
T |
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| Q |
113 |
tgtagccaaaaaataagataatggatatacctagatcaatctctcttccaaattatcactctttaaattcagatgtataatgcacagttgtaaccaag |
210 |
Q |
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| T |
36640264 |
tgtagccaaaaaataagataatggatatacctagatcaat--ctcttccaaattatcactctttaaattcagatgtataatgcacagttgtaaccaag |
36640169 |
T |
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