View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640_low_13 (Length: 222)
Name: NF5640_low_13
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 30201417 - 30201568
Alignment:
| Q |
16 |
tctccttttgctcactttcaagtcttgtgaaattacttattcatttatttatgatgttctattatgtaatgttggctataatactgactttttcctttaa |
115 |
Q |
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| T |
30201417 |
tctccttttgctcactttcaagtcttgtgaaattacttattcatttatttatgatgttctattatgtaatgttggctataatactgattttttcctttaa |
30201516 |
T |
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| Q |
116 |
tcggcaaatattattctctttgaaattgtgtaagaaacacaattctcgtgga |
167 |
Q |
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| T |
30201517 |
tcggcaaatattattctctttgaaattgtgtaagaaacacaattctcgtgga |
30201568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 163 - 222
Target Start/End: Original strand, 30201598 - 30201657
Alignment:
| Q |
163 |
gtggaacattagtacaatggtgccgtttaaaaacggagaaaacaccttccaaacccgccc |
222 |
Q |
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| T |
30201598 |
gtggaacattaatacaatggtgccatttaaaaatggaaaaaacaccttccaaacccgccc |
30201657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30223337 - 30223391
Alignment:
| Q |
18 |
tccttttgctcactttcaagtcttgtgaaattacttattcatttatttatgatgt |
72 |
Q |
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| T |
30223337 |
tccttttgctcactttcaagtcttgcaaaattacttatacatttatttatgatgt |
30223391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 30230578 - 30230632
Alignment:
| Q |
18 |
tccttttgctcactttcaagtcttgtgaaattacttattcatttatttatgatgt |
72 |
Q |
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| T |
30230578 |
tccttttgctcactttcaattcttgcaaaattacttattcatttatttatgatgt |
30230632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 8034752 - 8034798
Alignment:
| Q |
111 |
tttaatcggcaaatattattctctttgaaattgtgtaagaaacacaa |
157 |
Q |
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| T |
8034752 |
tttaatcgacaaatattattctcgtcgagattgtgtaagaaacacaa |
8034798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 2185204 - 2185250
Alignment:
| Q |
111 |
tttaatcggcaaatattattctctttgaaattgtgtaagaaacacaa |
157 |
Q |
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| T |
2185204 |
tttaatcgacaaatattattcttgttgagattgtgtaagaaacacaa |
2185250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 6141457 - 6141503
Alignment:
| Q |
111 |
tttaatcggcaaatattattctctttgaaattgtgtaagaaacacaa |
157 |
Q |
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| T |
6141457 |
tttaatcgacaaatattattctcgtcgagattgtgtaagaaacacaa |
6141503 |
T |
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