View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5640_low_2 (Length: 473)

Name: NF5640_low_2
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5640_low_2
NF5640_low_2
[»] chr6 (8 HSPs)
chr6 (16-454)||(33312318-33312756)
chr6 (16-454)||(12433959-12434376)
chr6 (16-454)||(16723-17159)
chr6 (16-454)||(3548387-3548825)
chr6 (16-165)||(18308296-18308445)
chr6 (22-395)||(13734477-13734850)
chr6 (94-323)||(11777056-11777284)
chr6 (287-454)||(18308442-18308609)
[»] chr5 (7 HSPs)
chr5 (16-454)||(13644420-13644858)
chr5 (16-454)||(35339825-35340263)
chr5 (55-416)||(11722275-11722636)
chr5 (21-341)||(21899654-21899974)
chr5 (52-444)||(5782724-5783116)
chr5 (53-443)||(19070207-19070597)
chr5 (55-167)||(17763307-17763419)
[»] chr4 (15 HSPs)
chr4 (16-454)||(15443048-15443486)
chr4 (16-453)||(17938991-17939432)
chr4 (16-235)||(39915291-39915510)
chr4 (16-235)||(7188223-7188442)
chr4 (22-325)||(33042130-33042433)
chr4 (22-444)||(8668594-8669016)
chr4 (22-416)||(10674552-10674945)
chr4 (22-416)||(10888192-10888585)
chr4 (31-341)||(1930191-1930501)
chr4 (259-454)||(7184982-7185177)
chr4 (114-416)||(10911072-10911373)
chr4 (114-330)||(10697303-10697519)
chr4 (350-454)||(11486442-11486546)
chr4 (22-118)||(10693630-10693726)
chr4 (22-118)||(10907396-10907492)
[»] scaffold0238 (1 HSPs)
scaffold0238 (16-454)||(1442-1880)
[»] chr2 (8 HSPs)
chr2 (16-454)||(3867763-3868201)
chr2 (16-329)||(25976565-25976878)
chr2 (21-323)||(5114821-5115123)
chr2 (16-347)||(20380756-20381087)
chr2 (76-342)||(12100959-12101225)
chr2 (63-147)||(15702099-15702183)
chr2 (83-151)||(15717405-15717473)
chr2 (63-143)||(21152369-21152449)
[»] chr3 (7 HSPs)
chr3 (16-292)||(3582199-3582475)
chr3 (186-447)||(20972039-20972300)
chr3 (23-291)||(16313173-16313442)
chr3 (23-291)||(18494167-18494436)
chr3 (16-151)||(20971911-20972041)
chr3 (16-151)||(14679761-14679896)
chr3 (52-444)||(19829761-19830153)
[»] chr8 (6 HSPs)
chr8 (22-444)||(21591122-21591544)
chr8 (22-444)||(14411299-14411721)
chr8 (35-401)||(23599919-23600286)
chr8 (54-323)||(17458535-17458800)
chr8 (16-80)||(4207537-4207601)
chr8 (83-147)||(18694077-18694141)
[»] chr1 (8 HSPs)
chr1 (16-446)||(30730405-30730835)
chr1 (73-323)||(13311104-13311354)
chr1 (21-168)||(21805374-21805521)
chr1 (22-206)||(10425361-10425545)
chr1 (52-342)||(11780944-11781235)
chr1 (162-341)||(21797249-21797428)
chr1 (25-173)||(1625597-1625745)
chr1 (243-420)||(10425557-10425734)
[»] scaffold0363 (1 HSPs)
scaffold0363 (22-444)||(6990-7412)
[»] chr7 (3 HSPs)
chr7 (24-401)||(3729248-3729625)
chr7 (16-329)||(20942362-20942675)
chr7 (305-444)||(17181367-17181506)
[»] scaffold0416 (1 HSPs)
scaffold0416 (19-434)||(8966-9381)
[»] scaffold0044 (1 HSPs)
scaffold0044 (315-454)||(93691-93830)
[»] scaffold0061 (1 HSPs)
scaffold0061 (48-342)||(37885-38179)
[»] scaffold0017 (1 HSPs)
scaffold0017 (48-342)||(160600-160894)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-341)||(61288-61610)
[»] scaffold0292 (1 HSPs)
scaffold0292 (21-248)||(19364-19591)
[»] scaffold0281 (1 HSPs)
scaffold0281 (16-329)||(5489-5802)
[»] scaffold0490 (1 HSPs)
scaffold0490 (16-356)||(11876-12216)
[»] scaffold0125 (2 HSPs)
scaffold0125 (16-356)||(31360-31700)
scaffold0125 (16-356)||(40671-41011)
[»] scaffold0093 (1 HSPs)
scaffold0093 (19-341)||(10188-10510)
[»] scaffold0063 (2 HSPs)
scaffold0063 (135-327)||(59435-59627)
scaffold0063 (22-101)||(59635-59714)
[»] scaffold0062 (3 HSPs)
scaffold0062 (63-147)||(51011-51095)
scaffold0062 (63-147)||(63550-63634)
scaffold0062 (83-151)||(65963-66031)
[»] scaffold0021 (1 HSPs)
scaffold0021 (214-319)||(148282-148387)


Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 33312756 - 33312318
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33312756 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacggcacttgcaatttccttcaaggttctctcccgcc 33312657  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33312656 aatactcttgtggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 33312557  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33312556 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 33312457  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33312456 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 33312357  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33312356 ttaacaccttctgacaatcttctactcccttacggtatt 33312318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 12434376 - 12433959
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||  |||||||||||||||||| || ||||| ||||  ||||||||  ||||||||| |||| |||||||||| |||||||    
T  12434376 atgcgagcataatgaccaaagaaacgatttctagttggtccgtcgatatctatagtagtaccaactgcacttgcaaattccatcaaggttctttcccgcc 12434277  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||| |||||| |||| |||||||||||| |||||||  ||  |||||||||                     ||||| | ||||||||||||||||| ||    
T  12434276 aatgctcttgtggtagctccaccaaacgaatccaaagcgaagcatgagtct---------------------agtctctggtccattgtgaaaatctgaa 12434198  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12434197 caaaccaggcttgagatttatcgtgcatgctacccatattttctttaaatcctccgctgagtcaaaatgaaagtcataataacccttgccaagaggcacc 12434098  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  12434097 attttccatcatgcctttttcttctaagtcttatcaattttaatactgcgatcacgtgcagaataaggtttgtctcctttgttaagagtcaaccgagccc 12433998  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12433997 ttaacaccttctgacaatcttctactcccttacggtatt 12433959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 16723 - 17159
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgta-ccaacgacacttgcaatttccttcaaggttctctcccgc 114  Q
    |||| |||||||||||||||  |||||||| ||||| ||||||||||||||||||| ||  |||||  ||||||||||||||||||||    ||||||||    
T  16723 atgcaagcataatgaccaaaaatacgatttttagttagtccatcaatatcaataggtgtttccaaccgcacttgcaatttccttcaag----tctcccgc 16818  T
Q  115 caatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctca 214  Q
    ||||| ||||||||||  || |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  16819 caatattcttgcggtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgtctgaaatttaaagtctttggtccattgtgaaaatctca 16918  T
Q  215 acaaaccaggcttgagatttatcgtgtctgctgcccatattttcttt-aaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggca 313  Q
    ||||||||||||| ||||||| |||  || ||||||||||||| ||| || ||||||||||||||||| |||||||||||||| | ||| |||||| |||    
T  16919 acaaaccaggcttaagatttaccgtccctactgcccatattttttttgaagtcctccgccgagtcaaagtgaaagtcataataccacttaccaagaagca 17018  T
Q  314 ccattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagc 413  Q
    |||||||||| | |||| ||||||||||| | ||  ||||||||||||| ||| || ||||| | ||||||||||| |||| |||||||| ||| |||||    
T  17019 ccattttccagcttgccgttgtcttccaaatttttccaattttaatactgagaacatgtgcagagtaaggtttgtccccttcgttaagagtcaatcgagc 17118  T
Q  414 ccttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||||||| ||  |||||||||| | ||||||| ||||||    
T  17119 ccttaacacttttcgacaatcttcgagtcccttatggtatt 17159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 3548387 - 3548825
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||| || || |||||  |||||||||||||||||||||| ||||||||||    
T  3548387 atgcgagcataatgaccaaaagtacgatttctagttggtccattaatatcaattggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 3548486  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||| ||||||||  || |||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||||| || ||| ||||||||||||||||    
T  3548487 aatacttttgcggtagttctaccaaacgtatccaaagtgatacatgagtttgtttatgcgccagaaatttaaagtccttggtctattgtgaaaatctcaa 3548586  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||||||||| || ||||||| | |  || |||||||| |||| | ||| | || ||||||||| || |||||||||||||| ||||| | ||||||||||    
T  3548587 caaaccaggattaagatttaccatccctactgcccattttttttataagttcttcgccgagtcgaagtgaaagtcataataccccttactaagaggcacc 3548686  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||| | | |||| ||||||||||| | ||   |||||||||| | |||||||||||||| ||||||||||| | ||||||| ||| ||| |||||||    
T  3548687 attttctagcttgccgttgtcttccaaatttttctaattttaatattgagatcacgtgcaaagtaaggtttgtcccttttgttaggagtcaatcgagccc 3548786  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||||  ||  |||||||||| | || |||| ||||||    
T  3548787 ttaacatttttcgacaatcttccagtcacttatggtatt 3548825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 18308296 - 18308445
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||    
T  18308296 atgcaagcataatgaccaaaggtacgatttctagttggtccatcaatatcaatgggtgtaccaacggcacttgcaatttccttcaaggttctctcccacc 18308395  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtc 165  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18308396 aatactcttgcggtaactccaccaaacgtatccaaatcgagacatgagtc 18308445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 22 - 395
Target Start/End: Complemental strand, 13734850 - 13734477
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| |  ||||  |   ||||||| |||||||||||  ||||||| |||||||| |    
T  13734850 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcgctgtacttatcgcacttgctatttccttcaaaattctctctcgccaatatt 13734751  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | || |||| ||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| | |||||||||||| |  || |||||    
T  13734750 cctgtggtacctccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttcgcccattgtgaaaaccgtaataaacc 13734651  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
    ||||| |||  | | ||||  |||||||||||||||  | |  || |||| ||||||||| ||||||||||||||  | ||||| |||| ||||||||||    
T  13734650 aggctcgaggctcaccgtgcgtgctgcccatatttttctaaggtcatccgtcgagtcaaagtgaaagtcataatagtctttgcctagagtcaccattttc 13734551  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctccttt 395  Q
    |||||||||  ||| |||||   |||  |||| || || || |||| |||||||||||| ||||||| ||||||    
T  13734550 catcctgccgatgttttccatagctttccaatattgatgcttagatgacgtgcaaaatatggtttgtatccttt 13734477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 94 - 323
Target Start/End: Original strand, 11777056 - 11777284
Alignment:
Q  94 tccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctt 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||   |||||||  || ||||| |||||||  || |   |  |||| || ||||    
T  11777056 tccttcaaggttctctcccgccaatactcttgcggtaactcaataaaaaaaatccaaagcgatacatgtgtctgtta-tgagaaaggtatttgaaatctt 11777154  T
Q  194 tagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    | ||||| || || |||||||||||||| ||||||||||| || ||  ||||||||||||||||   || ||| ||||||| |||||| |||||||||||    
T  11777155 tggtccactgcgataatctcaacaaacccggcttgagattgattgtacctgctgcccatatttttcgtagatcatccgccgtgtcaaagtgaaagtcata 11777254  T
Q  294 ataacccttgccaagaggcaccattttcca 323  Q
     ||||| ||| | |||||||||||||||||    
T  11777255 gtaacctttgtcgagaggcaccattttcca 11777284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 287 - 454
Target Start/End: Original strand, 18308442 - 18308609
Alignment:
Q  287 agtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggttt 386  Q
    |||||||||| ||||| |||||||||||||||||| | || |||  |||  ||||| | ||  ||||||||| ||| |||||||||||| | ||||||||    
T  18308442 agtcataataccccttaccaagaggcaccattttcgaaccagccgctgttctccaaattttcccaattttaacactgagatcacgtgcagagtaaggttt 18308541  T
Q  387 gtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||| ||||||||||||| ||| |||||||||||| ||||   ||||||||| | |||||||| |||||    
T  18308542 gtcccctttgttaagagtcaagcgagcccttaacgcctttctacaatcttccagtcccttactgtatt 18308609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 13644420 - 13644858
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||   ||||| ||||||||  |||||||||||||| ||||||||||||||||||    
T  13644420 atgcgagcataatgaccaaaggaacgatttctagttggtccgtcgataaatataggagtaccaactgcacttgcaatttccatcaaggttctctcccgcc 13644519  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| ||| |||||||| |||||||  ||  |||||||||||||||||| |  || |||||||||||| ||||||||||||||||||||    
T  13644520 aatactcttgtggtagctctaccaaacgaatccaaagcgaagcatgagtctgtttctgcgtcaaaattttaaagtctttggtccattgtgaaaatctcaa 13644619  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||||||||||||||||||||  ||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13644620 caaaccaggcttgagatttactgtgcctactacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcacc 13644719  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||    
T  13644720 attttccattctgccattgtcttccaagtcttatcaattttaatactgagatcacatgcagaataaggtttgtctcctttgttaagagtcaaccgagccc 13644819  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  13644820 ttaacaccttccgacaatcttctactcccttacggtatt 13644858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 35340263 - 35339825
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  35340263 atgcgagcataatgaccaaagatacgatttctagttggtccatcaatatcaataggtgtaccaacggcacttgcaatttccttcaaggttctctcccgcc 35340164  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340163 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 35340064  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||| ||||| | |||  || ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| || |||||||||    
T  35340063 caaaccaggctttagattaaccgttcctactgcccatattttctttaaatcctccgccgattcgaaatgaaagtcataataccccttaccgagaggcacc 35339964  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||||| ||||||  |||  ||||| | ||  ||||||||| ||| |||||||||||| | ||||| ||||| ||||| ||||||| ||| |||||||    
T  35339963 attttccaacctgccgctgttctccaaattttcccaattttaacactgagatcacgtgcagagtaaggcttgtcccctttattaagagtcaagcgagccc 35339864  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||| ||||   ||||||||| | |||||||| |||||    
T  35339863 ttaacgcctttctacaatcttccagtcccttactgtatt 35339825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 55 - 416
Target Start/End: Complemental strand, 11722636 - 11722275
Alignment:
Q  55 ccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattg 154  Q
    |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||| || ||||||| ||    
T  11722636 ccatcaatgtcaattggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatattcttgcggtaactccaccaatcgaatccaaagtg 11722537  T
Q  155 agacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatat 254  Q
    | |||||||||||||| || ||  || |||| |||||||| ||||||||||||||    |||||||| | |||||| || | |||| |||||||||||||    
T  11722536 aaacatgagtctgtttttgagcaagatatttgaagtctttggtccattgtgaaaactgtaacaaacccgacttgaggttcaccgtgcctgctgcccatat 11722437  T
Q  255 tttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatcaatt 354  Q
    | |  | |  || | |||||||||||| ||||| |||||||| || ||||| ||||||||||||||||| ||||||  ||| || ||   |||  |||||    
T  11722436 tcttctaaggtcatgcgccgagtcaaagtgaaaatcataatagcctttgcctagaggcaccattttccaccctgccaatgtttttcatagctttccaatt 11722337  T
Q  355 ttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccct 416  Q
    ||  | || |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||    
T  11722336 ttgttgcttagatcacgtgcaaagtatggtttatctcccttgttaagagtcaaacgcgccct 11722275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 21899654 - 21899974
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| |||| ||||||||||||||||||||| || || |||||  |||| ||||||||||||||  ||||||||| |||||||    
T  21899654 agcataatgcccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacattctctccctccaatac 21899753  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    ||||| |||| ||| |||||||||||||||| ||| ||||| ||||| ||||||| |||| |||| || ||||||||||| || || ||||  | |||||    
T  21899754 tcttgtggtagctcgaccaaacgtatccaaagtgatacatgtgtctgcttctgcgtctgatatttgaaatctttagtccactgagagaatcgtagcaaac 21899853  T
Q  221 caggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccatttt 320  Q
    | |||||||| || || ||  || |  ||| ||||||| |  |||| ||||| || |||||  |||| |||||||| ||||| |||||||| ||||||||    
T  21899854 ccggcttgaggttaattgtacctaccccccttattttcctataatcatccgcggattcaaagagaaaatcataataccccttaccaagaggtaccatttt 21899953  T
Q  321 ccatcctgcctttgtcttcca 341  Q
    ||| || ||| ||||||||||    
T  21899954 ccaaccagccattgtcttcca 21899974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 52 - 444
Target Start/End: Original strand, 5782724 - 5783116
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| ||||| ||  | |||||  | ||||| || |||||||| ||||||||||||||||| || ||||||||||| || || |  |||||||    
T  5782724 ggtccatcaatgtcaattggattgccaaccgcgcttgcgatctccttcaaagttctctcccgccaatattcctgcggtaactcaactaagcaaatccaaa 5782823  T
Q  152 ttgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgccca 251  Q
      || ||||| |||||||||||     |  |||| || ||||| ||||| || || |||||||||||||| |||||||| || |  ||  ||||||||||    
T  5782824 gagatacatgtgtctgtttctgataaaggtatttgaaatctttggtccactgcgataatctcaacaaacccggcttgaggttgactgtacctgctgccca 5782923  T
Q  252 tattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatca 351  Q
    |||||||  || ||| ||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||  | |||  ||| ||||||  |||  |     
T  5782924 tattttccgtagatcatccaccgagtcaaagtgaaagtcatagtaacctttgccaagaggcaccattttccaggccgccgatgttttccaatgctttcct 5783023  T
Q  352 attttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactccc 444  Q
    |||||  |||| | ||||||||||||||| || || ||||| |||||||||| ||| |||||||||||||| ||||  || ||||||||||||    
T  5783024 attttggtacttaaatcacgtgcaaaatacggcttatctcccttgttaagagtcaagcgagcccttaacacattcttgcattcttctactccc 5783116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 53 - 443
Target Start/End: Original strand, 19070207 - 19070597
Alignment:
Q  53 gtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaat 152  Q
    |||||||||| ||||| || || |||||  | ||||| || |||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||     
T  19070207 gtccatcaatgtcaatcggggtgccaaccgcgcttgcgatctccttcaaagttctctcccgccaatactcttgcagtaactcaaccaagcgaatccaaag 19070306  T
Q  153 tgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccat 252  Q
     || ||||| ||||||||||| |   |  |||| || ||||| ||||| || || ||||| || ||||| |||||||| || |  ||  |||||||||||    
T  19070307 agatacatgtgtctgtttctgagaaaggtatttgaaatctttggtccactgcgataatcttaataaacccggcttgaggttgactgtacctgctgcccat 19070406  T
Q  253 attttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatcaa 352  Q
    ||||||  || ||| |||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||  | |||  ||| ||||||  |||  | |    
T  19070407 attttccgtagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccaagaggcgccattttccaggccgccgatgttttccaatgctttccta 19070506  T
Q  353 ttttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactcc 443  Q
    ||||  |||| | |||||||||| |||| || || || || |||||||||| ||| ||| |||||||| | ||||  || |||||||||||    
T  19070507 ttttggtacttaaatcacgtgcagaatacggcttatcccccttgttaagagtcaagcgaccccttaacgcattcttgcattcttctactcc 19070597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 17763419 - 17763307
Alignment:
Q  55 ccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattg 154  Q
    |||||||| || ||||| || ||||| |  ||||||||||||||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||||| ||    
T  17763419 ccatcaatgtcgataggggttccaaccatgcttgcaatttccttcaatgttctctcccactaatactcctgcggtaactcaaccaagcgaatccaaagtg 17763320  T
Q  155 agacatgagtctg 167  Q
    | ||||| |||||    
T  17763319 aaacatgtgtctg 17763307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 15443048 - 15443486
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||||  ||||||||||||||||| || ||||| ||||| ||||||||  |||||||||||||| ||| ||||||||||||||    
T  15443048 atgcgagcataatgaccaaaggagcgatttctagttggtccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgcc 15443147  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| |||||||||| | |||||||  ||   ||||||||||||||||| |  || |||||||||||| || | |||||||||||||||    
T  15443148 aatactcttgtggtagctccaccaaaagaatccaaagcgaagtatgagtctgtttctgcgtcaaaagtttaaagtctttggtgcgttgtgaaaatctcaa 15443247  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15443248 caaaccaggcttgagattgaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagaggcacc 15443347  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  15443348 attttccatcctgccattgtcttccaagtcttatcaattttaatactgagatcacgcgcagaataaggtttgtctcctttgttaagagtcaaccgagccc 15443447  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15443448 ttaacaccttctgacaatcttctactcccttacggtatt 15443486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 453
Target Start/End: Complemental strand, 17939432 - 17938991
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||| ||||||||||||||| || || ||||| ||||| ||||||||  |||||||||||||| ||| ||||||||||||||    
T  17939432 atgcgagcataatgaccaaaggaacgatttctagttggcccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgcc 17939333  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| |||||||||||| |||||||  ||  ||||||||||||||| || |  || | |||||||||| ||||||||||||||||||||    
T  17939332 aatactcttgtggtagctccaccaaacgaatccaaagcgaagcatgagtctgtttctacgtcaaaattataaagtctttggtccattgtgaaaatctcaa 17939233  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  17939232 caaaccaggcttgagatttaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataccccttgccaagagacacc 17939133  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcc----tttgttaagagccaaccga 411  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    ||||||||||| |||||||    
T  17939132 attttccatcctgccattgtcttccaagtcttatcaattttaatactgagatcacgtgcagaataaggtttgtctccttaatttgttaagagtcaaccga 17939033  T
Q  412 gcccttaacaccttctgacaatcttctactcccttacggtat 453  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  17939032 gcccttaacaccttctgacaatcttctactcccttacagtat 17938991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 39915291 - 39915510
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||  ||||  ||||||||||||| |||||||| ||||||||||    
T  39915291 atgcgagcataatgaccaaaagtacaatttctagttggtccatcaatatcaatacgtgtttcaaccgcacttgcaatttctttcaaggtcctctcccgcc 39915390  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || |||||||||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39915391 aatactcttgcggtagttctaccaaacgtatccaaagtgatgcatgagtctgtttctgcgcctgaaatttaaagtccttagtccattgtgaaaatctcaa 39915490  T
Q  216 caaaccaggcttgagattta 235  Q
    || ||||||||| |||||||    
T  39915491 cagaccaggcttaagattta 39915510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 7188442 - 7188223
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||  |||||||||||||||||||||| ||||||||||    
T  7188442 atgcgagcataatgaccaaaagtacgatttctagttggtccataaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 7188343  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||| |||||| |||  || |||||||||||||||| ||| ||| ||||||| ||||| |||||| |||||||||| || ||||||||||||||||||||    
T  7188342 aatattcttgcagtagttctaccaaacgtatccaaagtgatacacgagtctgcttctgtgcctgatatttaaagtccttggtccattgtgaaaatctcaa 7188243  T
Q  216 caaaccaggcttgagattta 235  Q
    |||||||||||| |||||||    
T  7188242 caaaccaggcttaagattta 7188223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 33042130 - 33042433
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||  ||||  || |||||||| || ||||| || ||||||||   |||||| |||||||||||||||||||||||||||||||    
T  33042130 gcatagtgaccaaaggtacagtttcgtgtcggtccatctatgtcaatcggagtaccaaccggacttgcgatttccttcaaggttctctcccgccaatact 33042229  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || |||||||  ||  |||| ||||||||||| |||||| |||| || ||||||||||| ||||| ||||| ||||||||    
T  33042230 cctgcggtaactccaccaagcgaatccaaagagatgcatgtgtctgtttctgagcctgatatttgaaatctttagtccactgtgataatcttaacaaacc 33042329  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     |||||||| || |  |||  |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  33042330 cggcttgaggttgactgtgcatgctgcccatattttccttagatcatccgccgagtcaaagtgaaagtcatagtaacctttgccgagaggcaccattttc 33042429  T
Q  322 catc 325  Q
    ||||    
T  33042430 catc 33042433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 444
Target Start/End: Original strand, 8668594 - 8669016
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||| |||   || || ||||| || ||||| || ||||||||  ||||| | ||||||||||| |||||||||||||||||||    
T  8668594 gcatagtgaccaaaggtacggttttgtgtcggaccatctatgtcaatcggagtaccaaccgcacttacgatttccttcaaagttctctcccgccaatact 8668693  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || |||||||  || ||||| || |||||||| || ||| |||| || ||||| ||||||||||| || || | ||||||    
T  8668694 cctgcggtaactccaccaagcgaatccaaagagatacatgtgtttgtttctgagcatgatatttgaaatctttggtccattgtgataaccttagcaaacc 8668793  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     |||||||| || |  ||||||||||||||||| |||  || ||| |||||||||||||||||||| ||||| || || ||||| |||||||||||||||    
T  8668794 tggcttgaggttaactgtgtctgctgcccatatcttccctagatcgtccgccgagtcaaaatgaaaatcatagtatcctttgccgagaggcaccattttc 8668893  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaaca 421  Q
    || || |||  ||| ||||||  ||| || |||||| | || |  ||||||||| | || || || ||||| |||||||||| ||| ||||||||||||     
T  8668894 cagcccgccgatgttttccaaagcttttcgattttattgcttaagtcacgtgcagagtatggcttatctcccttgttaagagtcaaacgagcccttaacg 8668993  T
Q  422 ccttctgacaatcttctactccc 444  Q
    ||||||  || ||||| ||||||    
T  8668994 ccttcttgcattcttccactccc 8669016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 10674945 - 10674552
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |    
T  10674945 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatatt 10674846  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    |||||||||||||||| || || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| ||||||||||||||||| ||||||||    
T  10674845 cttgcggtaactccactaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaatcttaacaaacc 10674746  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| |||||||||||||| || ||||| |||||||||||||||    
T  10674745 tggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttc 10674646  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccct 416  Q
    || ||||||  ||| |||||   |||  |||||||  | || |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||    
T  10674645 caccctgcc-gtgttttccattgctttccaattttgttgcttagatcacgtgcaaagtatggtttatctcccttgttaagagtcaaacgcgccct 10674552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 22 - 416
Target Start/End: Complemental strand, 10888585 - 10888192
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |    
T  10888585 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatatt 10888486  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    |||||||||||||||| || || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| ||||||||||||||||| ||||||||    
T  10888485 cttgcggtaactccactaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaatcttaacaaacc 10888386  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| |||||||||||||| || ||||| |||||||||||||||    
T  10888385 tggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggcaccattttc 10888286  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccct 416  Q
    || ||||||  ||| |||||   |||  |||||||  | || |||||||||||||| || ||||| ||||| |||||||||| ||| || |||||    
T  10888285 caccctgcc-gtgttttccattgctttccaattttgttgcttagatcacgtgcaaagtatggtttatctcccttgttaagagtcaaacgcgccct 10888192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 31 - 341
Target Start/End: Original strand, 1930191 - 1930501
Alignment:
Q  31 ccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggta 130  Q
    ||||| ||||| |||| ||||||||||||||||||||| || || |||||  | || |||||||||||||| ||||||||||||||||||||||| ||||    
T  1930191 ccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcgctagcaatttccttcaacgttctctcccgccaatactcttgtggta 1930290  T
Q  131 actccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgag 230  Q
     ||||||||||||||||||||| || ||||| |||||||||| ||  ||| | || || ||||||||||| ||||| ||||  | |||||| |||||| |    
T  1930291 gctccaccaaacgtatccaaatcgatacatgtgtctgtttctacgtttgatacttgaaatctttagtccactgtgagaatcgtagcaaacccggcttgtg 1930390  T
Q  231 atttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcc 330  Q
     || || ||  || |||||||||||||| |  |||| |||||||| |||||  |||| |||||||| ||||| |||||||| | ||||||||| || |||    
T  1930391 gttaattgtacctactgcccatattttcctataatcatccgccgattcaaagagaaaatcataataccccttaccaagaggtatcattttccaaccagcc 1930490  T
Q  331 tttgtcttcca 341  Q
     ||||||||||    
T  1930491 attgtcttcca 1930501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 259 - 454
Target Start/End: Complemental strand, 7185177 - 7184982
Alignment:
Q  259 tttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatcaattttaa 358  Q
    ||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||||| | ||  |||||||||    
T  7185177 tttaagtcatccgccgagtcaaagtgaaagtcataataacccttaccaagaggcaccattttccagcttgccgttgtcttccaaatttttccaattttaa 7185078  T
Q  359 tactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    |||| || ||||||||| | ||||||||||| |||||||| |||| |||  ||||||||||||| ||| |||||||||| | ||||||| ||||||    
T  7185077 tactgagttcacgtgcagagtaaggtttgtcccctttgttgagagtcaattgagcccttaacactttccgacaatcttccagtcccttatggtatt 7184982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 416
Target Start/End: Original strand, 10911072 - 10911373
Alignment:
Q  114 ccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctc 213  Q
    |||||| |||||||||||||| ||||| || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| |||||||||||||| |      
T  10911072 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaaccgt 10911171  T
Q  214 aacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggca 313  Q
    |||||||| ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| |||||||||||||| || ||||| |||||||    
T  10911172 aacaaacccggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggca 10911271  T
Q  314 ccattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagc 413  Q
    |||||||||| ||||||  ||| |||||   |||  |||||||  | || |||||||||||||| || ||||| ||||| |||||||||| ||| || ||    
T  10911272 ccattttccaccctgcc-gtgttttccattgctttccaattttgttgcttagatcacgtgcaaagtatggtttatctcccttgttaagagtcaaacgcgc 10911370  T
Q  414 cct 416  Q
    |||    
T  10911371 cct 10911373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 114 - 330
Target Start/End: Original strand, 10697303 - 10697519
Alignment:
Q  114 ccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctc 213  Q
    |||||| |||||||||||||| ||||| || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| |||||||||||||| |      
T  10697303 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaaccgt 10697402  T
Q  214 aacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggca 313  Q
    |||||||| ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| |||||||||||||| || ||||| |||||||    
T  10697403 aacaaacccggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataatagcctttgcctagaggca 10697502  T
Q  314 ccattttccatcctgcc 330  Q
    |||||||||| ||||||    
T  10697503 ccattttccaccctgcc 10697519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 350 - 454
Target Start/End: Original strand, 11486442 - 11486546
Alignment:
Q  350 caattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactcccttacg 449  Q
    ||||||||  ||| |||||||| ||| || ||||||| || ||||||||||||| ||| || |||||||||||||||  |||||||||||||||||| ||    
T  11486442 caattttagcactgagatcacgcgcagaaaaaggtttatcccctttgttaagagtcaaacgcgcccttaacaccttcctacaatcttctactcccttccg 11486541  T
Q  450 gtatt 454  Q
    |||||    
T  11486542 gtatt 11486546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 10693630 - 10693726
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||| ||||||||||||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||    
T  10693630 gcataatgtccaaaggtacgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaat 10693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 10907396 - 10907492
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||    
T  10907396 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaat 10907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 1442 - 1880
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||  |||||||||||||||||||||| ||||||||||    
T  1442 atgcgagcataatgaccaaaagtacgatttctagttggtccatcaatatcaatcggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 1541  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || ||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  1542 aatactcttgcggtagttctaccaaacatatccaaagtgatacatgagtttgtttctgcgcttgaaatttaaagtccttggtccattgtgaaaatctcaa 1641  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||| ||||||| |||  || ||||||||||||| ||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||    
T  1642 caaaccaggcttaagatttaccgttcctactgcccatattttttttaagtcctccgccgagttaaagtgaaagtcataataacccttaccaagaggcacc 1741  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||||||| ||||  |||||||||| | ||  ||||||||||||| ||||||| |||| | || |||||||| ||||||||||||| |||| ||||||    
T  1742 attttccatcttgccactgtcttccaaatttttccaattttaatactgagatcacatgcacagtagggtttgtcccctttgttaagagtcaactgagccc 1841  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||||| ||| |||||||||| | ||||||| ||||||    
T  1842 ttaacactttccgacaatcttccagtcccttatggtatt 1880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 3868201 - 3867763
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||| |||||||| |    
T  3868201 atgcgagcataatgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgtc 3868102  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||| ||||| ||||  || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3868101 aatattcttgtggtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgcctgaaatttaaagtccttagtccattgtgaaaatctcaa 3868002  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||| |||||||  ||  || ||||||||||||| ||||| ||||||||||||| ||| |||||||||||||| ||||| ||||||||||||    
T  3868001 caaaccaggcttaagatttactgtccctactgcccatattttttttaagtcctccgccgagtaaaagtgaaagtcataataccccttaccaagaggcacc 3867902  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||| | | |||| ||||||||||| | ||  |||| |||||| |||||||||||||| | ||||||||| | ||||||||||||| ||| |||||||    
T  3867901 attttctagcttgccgttgtcttccaaatttttccaatgttaatattaagatcacgtgcagagtaaggtttgccccctttgttaagagtcaatcgagccc 3867802  T
Q  416 ttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    ||||||| ||| |||||||||| | ||||||| ||||||    
T  3867801 ttaacactttccgacaatcttccaatcccttatggtatt 3867763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 25976565 - 25976878
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || ||||||||||||||||  |||||||    
T  25976565 atgcgagcataatgcccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggttcgttcccgcc 25976664  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||| || |||||||  || |||||||| ||||| ||| ||  || |||||||||||| |||||||| || || |  ||    
T  25976665 aatactcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaagtctttggtccattgagagaaccgtaa 25976764  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
     || |||||||| || || || ||| ||||||||||||| |||| |||||| ||| |||||||||| ||||| |||||| ||||||| || |||||||||    
T  25976765 taatccaggcttaaggttcattgtgcctgctgcccatatcttctgtaaatcgtccaccgagtcaaagtgaaaatcataaaaaccctttcctagaggcacc 25976864  T
Q  316 attttccatcctgc 329  Q
    |||||||| |||||    
T  25976865 attttccaacctgc 25976878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 21 - 323
Target Start/End: Complemental strand, 5115123 - 5114821
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| ||||  || |||||||| || ||||| || ||||||||  |||||||||||||||||||||||||||||| |||||||    
T  5115123 agcataatgtccaaaagtacggtttcgtgtcggtccatctatgtcaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccaccaatac 5115024  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    || ||||||||||||||||| || |||||||  || ||||||||||||||||| ||| || |||| || || || ||||||||||| ||  | ||||| |    
T  5115023 tcctgcggtaactccaccaagcgaatccaaagagatacatgagtctgtttctgagccagatatttgaaatccttggtccattgtgataactttaacaagc 5114924  T
Q  221 caggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccatttt 320  Q
    | |||||||| || || ||| ||||||||||||| ||| ||| ||| || ||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  5114923 ccggcttgaggttaattgtgcctgctgcccatatcttccttagatcgtcagccgagtcaaaatgaaagtcatagtaacctttgccgagaggcaccatttt 5114824  T
Q  321 cca 323  Q
    |||    
T  5114823 cca 5114821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 16 - 347
Target Start/End: Complemental strand, 20381087 - 20380756
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||  | |||| ||||||  | || ||||| ||||| || ||||   ||||||| ||||||||||| |||| ||||||||    
T  20381087 atgcgagcatagtgaccaaaagtgtggtttcgagttggctcgtcgatatctataggggtgccaaatgcacttgctatttccttcaatgttcgctcccgcc 20380988  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||||||||||||||| |||||||  || |||||||| ||||| ||| ||   |  ||||||||||| |||||||| || ||||| ||    
T  20380987 aatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagtttgtttttgcaccaatagcttaaagtcttttgtccattgagagaatcttaa 20380888  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||| ||||| |||| ||||| |||| | |||||||| || || |||||||| ||| |||| ||||| ||||| |||||| ||||||| |  |||||||||    
T  20380887 caatccaggtttgatatttaccgtgccggctgcccaaatgttttttaaatcatccaccgattcaaagtgaaaatcataaaaacccttactgagaggcacc 20380788  T
Q  316 attttccatcctgcctttgtcttccaagtctt 347  Q
    ||||||||||||||| | ||||||||| ||||    
T  20380787 attttccatcctgccgtcgtcttccaaatctt 20380756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 76 - 342
Target Start/End: Complemental strand, 12101225 - 12100959
Alignment:
Q  76 ccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcg 175  Q
    ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||  || |||||||  || | ||||||||| ||||| |    
T  12101225 ccaaccacacttgctatttcattcaatgttctctcccgccaatactcttgcggtaactcaaccagtcgaatccaaagcgataaatgagtctgcttctgag 12101126  T
Q  176 cctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccga 275  Q
    |  || |||| |  ||||| ||||| || || | ||| | |||||| | ||||||||| || ||  | |||||||||| ||    || ||||||| ||||    
T  12101125 caagatatttgacatctttggtccactgagagagtcttatcaaacccgacttgagattgattgtaccagctgcccataattgacgtagatcctccaccga 12101026  T
Q  276 gtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaa 342  Q
     ||||||||||| ||||| || || ||||| | ||| |||||||||||| ||||| |||| ||||||    
T  12101025 atcaaaatgaaaatcatagtatcctttgcctaaaggaaccattttccatgctgccattgttttccaa 12100959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 15702183 - 15702099
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  15702183 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 15702099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 15717473 - 15717405
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  15717473 cactttcaatttctttcaaagttctttcccgtcaatactcatgcggtaactcaaccaaacgtatccaaa 15717405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 21152449 - 21152369
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacg 143  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||| ||||||| ||||||||    
T  21152449 atcaataggagtgccaacctcactttcaatttctttcaaagttctttcccgccaatactcatgcagtaactcaaccaaacg 21152369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 8e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 3582199 - 3582475
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||  ||||| |||||||||||||||| ||||||||||    
T  3582199 atgcaagcataatgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcactttcaatttccttcaaggtcctctcccgcc 3582298  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  3582299 aatactcttgcggtagttctaccaaacgtatccaaagtgatacatgagtctgtttttgcgcctgaaatttaaagtccttggtccattgtgaaaatctcaa 3582398  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcat 292  Q
    ||||| |||||| ||||||| |||  || ||||||||||||  ||||| ||||||||||||||||| ||||||||||    
T  3582399 caaacaaggcttaagatttaccgtccctactgcccatatttattttaagtcctccgccgagtcaaagtgaaagtcat 3582475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 186 - 447
Target Start/End: Original strand, 20972039 - 20972300
Alignment:
Q  186 aaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatga 285  Q
    |||||| || ||||||||||||||||||||||||| |||||| |||||||  ||  || ||||||||||||| ||||| |||||||  |||||||| |||    
T  20972039 aaagtccttggtccattgtgaaaatctcaacaaactaggcttaagatttacagttcctactgcccatattttttttaagtcctccgttgagtcaaagtga 20972138  T
Q  286 aagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtt 385  Q
    ||||||||||| ||||| |||||||||||||||||||| | |||| ||||||||||| | ||  ||||||||||||| |||||||||||| | |||||||    
T  20972139 aagtcataataccccttaccaagaggcaccattttccaacttgccgttgtcttccaaatttttccaattttaatactgagatcacgtgcagagtaaggtt 20972238  T
Q  386 tgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactccctta 447  Q
    |||| ||||||||||||| ||| |||||||||||||| ||| |||||||||||| |||||||    
T  20972239 tgtcccctttgttaagagtcaatcgagcccttaacactttccgacaatcttctagtccctta 20972300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 16313442 - 16313173
Alignment:
Q  23 cataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactc 122  Q
    |||| |||||||||||||| ||||  || || ||||| || | ||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  16313442 catagtgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactc 16313343  T
Q  123 ttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacca 222  Q
     ||||||||||||||||| |  |||||||   | ||||||||||||||||| ||| || |||| || || ||  |||||||||| || || |||||| |     
T  16313342 ctgcggtaactccaccaagcaaatccaaagatatacatgagtctgtttctgagccagatatttgaaatccttgatccattgtgataaccttaacaaatcc 16313243  T
Q  223 ggcttgagatttatcgtgtctgctgcccatat-tttctttaaatcctccgccgagtcaaaatgaaagtca 291  Q
    |||||||| || || |||  |||||||||||| |||| ||| ||| ||  | ||||||||||||||||||    
T  16313242 ggcttgaggttaattgtgcatgctgcccatatctttccttagatcatcacctgagtcaaaatgaaagtca 16313173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 18494436 - 18494167
Alignment:
Q  23 cataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactc 122  Q
    |||| |||||||||||||| ||||  || || ||||| || | ||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  18494436 catagtgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactc 18494337  T
Q  123 ttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacca 222  Q
     ||||||||||||||||| |  |||||||   | ||||||||||||||||| ||| || |||| || || ||  |||||||||| || || |||||| |     
T  18494336 ctgcggtaactccaccaagcaaatccaaagatatacatgagtctgtttctgagccagatatttgaaatccttgatccattgtgataaccttaacaaatcc 18494237  T
Q  223 ggcttgagatttatcgtgtctgctgcccatat-tttctttaaatcctccgccgagtcaaaatgaaagtca 291  Q
    |||||||| || || |||  |||||||||||| |||| ||| ||| ||  | ||||||||||||||||||    
T  18494236 ggcttgaggttaattgtgcatgctgcccatatctttccttagatcatcacctgagtcaaaatgaaagtca 18494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 20971911 - 20972041
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |      |||||||||||||||||||||| ||||||||||    
T  20971911 atgcgagcataatgaccaaaaatacgatttctagttggtccatcaatatcaataggtgtccg-----cacttgcaatttccttcaaggtcctctcccgcc 20972005  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    |||| ||||||||||| || ||||||||||||||||    
T  20972006 aatattcttgcggtaattctaccaaacgtatccaaa 20972041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 14679761 - 14679896
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| || | |||||| ||||||||||| ||||| || |||||| || |||||||||||||||| || |  |||||||    
T  14679761 atgcgagcatagtgaccaaaagtacggttgcgagttggcccatcaatatctataggtgtgccaacggcaattgcaatttccttcaatgtacgttcccgcc 14679860  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||||||||||| |||||||| |||||||    
T  14679861 aatactcttgcggtaactcaaccaaacgaatccaaa 14679896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 444
Target Start/End: Original strand, 19829761 - 19830153
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| ||||| || || |||||    ||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||    
T  19829761 ggtccatcaatgtcaatcggggtgccaaccgtgcttgcgatctccttcaaagttctctcccgccaatactcctgcggtaactcaaccaagcgaatccaaa 19829860  T
Q  152 ttgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgccca 251  Q
     ||| ||||| | ||||||||| |   |  |||| || ||||| ||||| |  || ||||||| |||||  |||||||| || |  ||   || ||||||    
T  19829861 gtgatacatgtgcctgtttctgagaaaggtatttgaaatctttggtccactacgagaatctcatcaaactcggcttgaggttgaatgtacatgttgccca 19829960  T
Q  252 tattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaagtcttatca 351  Q
    ||||||   || ||| || ||| ||||||| ||||||| ||| ||||| |||||||| ||||||||||||||    |||  ||| ||||||  |||  |     
T  19829961 tatttttcgtagatcatctgccaagtcaaagtgaaagttatagtaacctttgccaagtggcaccattttccaggtcgccgatgttttccaatgctttcct 19830060  T
Q  352 attttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaacaccttctgacaatcttctactccc 444  Q
    |||||  |||| | ||||||||||||||| |  || || ||||||||||| | ||| |||||||||| | | ||||  || ||||||||||||    
T  19830061 attttggtacttaaatcacgtgcaaaatacgacttatcccctttgttaagggtcaaacgagcccttatcgcattcttgcattcttctactccc 19830153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 21591544 - 21591122
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| || |||||||| |||||||||||  |||||  ||||||||| |    
T  21591544 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccacacttgctatttccttcaaaattctcaaccgccaatatt 21591445  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    ||||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  21591444 cttgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 21591345  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     |||||||| || | |||| ||||||||||||||||  | |  || |||||||||||||| |||||||||||||| || ||||| |||||||||||||||    
T  21591344 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttc 21591245  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaaca 421  Q
    |||||||||  ||| |||||   |||  |||||||  | || ||||||||||||||||| |||||||||||||||||||| | ||| |||||||| ||||    
T  21591244 catcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgagccctcaaca 21591145  T
Q  422 ccttctgacaatcttctactccc 444  Q
    | ||||  ||||| |||| ||||    
T  21591144 cattcttgcaatcctctagtccc 21591122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 22 - 444
Target Start/End: Complemental strand, 14411721 - 14411299
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  | ||||| |||||||||||  |||||||||||||||| |    
T  14411721 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgctcttgctatttccttcaaaattctctcccgccaatatt 14411622  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  14411621 cctgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 14411522  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     |||||||| || | |||| ||||||||||||||||  | |  || || ||||||||||| |||||||||||||| || ||||| |||||||||||||||    
T  14411521 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttc 14411422  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaaca 421  Q
    |||||||||  ||| |||||   |||  |||||||  | || ||||||||||||||||| |||||||||||||||||||| | ||| || ||||| ||||    
T  14411421 catcctgccgatgttttccataccttgccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgtgccctcaaca 14411322  T
Q  422 ccttctgacaatcttctactccc 444  Q
    | ||||  ||||| |||| ||||    
T  14411321 cattcttgcaatcctctagtccc 14411299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 35 - 401
Target Start/End: Complemental strand, 23600286 - 23599919
Alignment:
Q  35 aggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactc 134  Q
    ||||||||||||  || ||||||||||| ||||| || ||||| |   ||||||| ||||| | |||  |||| |||| |||||| || |||||||||||    
T  23600286 aggtacgatttcgcgtcggtccatcaatttcaatcggtgtacctatcgcacttgctatttcttacaaaattctttcccaccaatattcctgcggtaactc 23600187  T
Q  135 caccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagattt 234  Q
    ||||||||| ||||||| ||| |||||| | |||||||| ||  || |||| |||||||| |||||||||||||| || ||||| || | |||||| ||     
T  23600186 caccaaacgaatccaaagtgaaacatgattttgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaatcccgacttgaggttc 23600087  T
Q  235 atcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcc-tgccttt 333  Q
    |||||| ||  ||||||||||||  | |  || |||||||||||||| |||||||||||||| || ||| | |||||||||||||||||||| || |  |    
T  23600086 atcgtgccttttgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgtctagaggcaccattttccatccttgtcgat 23599987  T
Q  334 gtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaag 401  Q
    || |||||    ||  |||||||  | || ||||||||||||||||| ||||||||||||||||||||    
T  23599986 gttttccatacgtttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaag 23599919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 323
Target Start/End: Complemental strand, 17458800 - 17458535
Alignment:
Q  54 tccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaatt 153  Q
    ||||||||| ||||| || || |||||  | ||||| ||||||||| | ||||||||| ||||||| || ||||||||||| |||||  | |||||||      
T  17458800 tccatcaatgtcaatcggggtgccaaccgcgcttgcgatttccttcgaagttctctcctgccaatattcctgcggtaactcaaccaagtgaatccaaagc 17458701  T
Q  154 gagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccata 253  Q
    ||    || |||||||| || |   || |||| || | ||| |||||  | || ||||| |||||||| || ||||| || |  ||| ||||||||||||    
T  17458700 ga----tgtgtctgtttttgagaaagatatttgaaatatttggtccaacgagataatcttaacaaacccggattgaggttgactgtgcctgctgcccata 17458605  T
Q  254 ttttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttcca 323  Q
    |||||  || ||| |||||| ||||||| || |||||||| ||||| ||||| |||||||||||||||||    
T  17458604 ttttccgtagatcatccgccaagtcaaagtggaagtcatagtaacctttgccgagaggcaccattttcca 17458535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4207537 - 4207601
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaac 80  Q
    ||||||||||||||||||||||||| |||||||||||  ||||| ||||||||||| || |||||    
T  4207537 atgcgagcataatgaccaaaggtaccatttctagttgacccatcgatatcaataggtgttccaac 4207601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 18694141 - 18694077
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  18694141 cactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 18694077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 3e-89; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 30730835 - 30730405
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||| ||  | || |||||    |||||||||||||||||||||||||||||||    
T  30730835 atgcgagcataatgaccaaaggtacgatttctagttggcccatagatatctatttgtgttccaactgtgcttgcaatttccttcaaggttctctcccgcc 30730736  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||||||||||||||| |||||||  || |||||||| ||||| ||| ||   || ||||||||||| ||||| || || ||||||||    
T  30730735 aatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagtttgtttttgcaccaacaacttaaagtctttggtccagtgagagaatctcaa 30730636  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    |||||||||||||||||||| |||| |||| ||| | |||||||||||||| ||| |||| || ||| |||| |||||| | || || ||||||||||||    
T  30730635 caaaccaggcttgagatttaccgtgcctgcagcctaaattttctttaaatcgtccaccgattcgaaaggaaaatcataaaatcctttaccaagaggcacc 30730536  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccc 415  Q
    |||||||| ||| || |||||||||||  |||  ||||||||  ||| |||||||| ||| || ||||||| || ||||||| ||||| ||| ||  ||     
T  30730535 attttccagcctaccgttgtcttccaaaccttcccaattttagcactgagatcacgcgcagaaaaaggtttatcccctttgtgaagagtcaaacgcacct 30730436  T
Q  416 ttaacaccttctgacaatcttctactccctt 446  Q
    |||| ||||||  ||||||||||||||||||    
T  30730435 ttaagaccttcctacaatcttctactccctt 30730405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 73 - 323
Target Start/End: Original strand, 13311104 - 13311354
Alignment:
Q  73 gtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttct 172  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||  || |||||||| |||||||    
T  13311104 gtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactcatgcggtaactccaccaagcgaatccaaagagatacatgagtttgtttct 13311203  T
Q  173 gcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgc 272  Q
    | ||  || |||| ||  |||| ||||||||||| ||    |||||||| |||||||| || || ||| || |||| ||||| ||  ||| ||| || |     
T  13311204 gagctagatatttgaaagctttggtccattgtgataactgtaacaaacccggcttgaggttaattgtgcctactgctcatatctttcttagatcgtcagt 13311303  T
Q  273 cgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttcca 323  Q
    || |||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  13311304 cgtgtcaaaatgaaagtcatagtaacctttgccgagaggcaccattttcca 13311354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 21805521 - 21805374
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||| || || |||||  |||| |||||||||||||| ||||||||||| ||||||    
T  21805521 agcataatgcccaaaagtacggtttctagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacgttctctcccgtcaatac 21805422  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgt 168  Q
    ||||| |||| ||||||||||||||||||||| || ||||| ||||||    
T  21805421 tcttgtggtagctccaccaaacgtatccaaatcgatacatgtgtctgt 21805374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 10425361 - 10425545
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||| ||||  || |||||||| || || || || ||||||||  ||||||||||||||||||||||||||||| || ||||||    
T  10425361 gcatagtgaccaaaggtacggtttcgtgtcggtccatctatgtcgatcggagtaccaaccgcacttgcaatttccttcaaggttctctcctgcaaatact 10425460  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtga 206  Q
      ||||||||||||||||| || ||||| |  || |||||||| ||||| || ||| || |||| || ||||| |||||||||||    
T  10425461 tctgcggtaactccaccaagcgaatccataaagatacatgagtatgtttttgagccagatatttgaaatctttggtccattgtga 10425545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 342
Target Start/End: Original strand, 11780944 - 11781235
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| || || || || ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||| || ||||  || |||||||    
T  11780944 ggtccatcaatgtctatcggagtgccaaccacacttgctatttccttcaatgttctctcccaccaatactcttgcggtaattcaaccagtcgaatccaaa 11781043  T
Q  152 ttgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgccca 251  Q
       | ||||||||||| ||||  ||  || |||| || ||||| |||||||| || | ||| | |||||| ||||||||||| || ||    ||||||||    
T  11781044 gcaatacatgagtctgcttctaagcaagatatttgaaatctttggtccattgagatagtcttatcaaacccggcttgagattgattgtacaagctgccca 11781143  T
Q  252 tattttctttaaatcctccgccg-agtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaa 342  Q
    ||||||   || |||||| |||| | |||||||| || |||||||| || ||||| | ||| |||||||||||| | ||| |||| ||||||    
T  11781144 tattttacgtagatcctctgccgaattcaaaatggaaatcataatatcctttgcctaaaggaaccattttccatgccgccattgttttccaa 11781235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 21797428 - 21797249
Alignment:
Q  162 agtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttcttt 261  Q
    |||||||||||||| |||| | || || ||||||||||| ||||| || |  | |||||| |||||||| || || ||  || |||||||||||||| |     
T  21797428 agtctgtttctgcgtctgatacttgaaatctttagtccactgtgagaagcgtagcaaacccggcttgaggttaattgtacctactgcccatattttccta 21797329  T
Q  262 aaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttcca 341  Q
     |||| |||||||| |||||  |||| |||||||| ||||| |||||||| ||||||||||| || ||| ||||||||||    
T  21797328 taatcatccgccgattcaaagagaaaatcataataccccttaccaagaggtaccattttccaaccagccgttgtcttcca 21797249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 1625597 - 1625745
Alignment:
Q  25 taatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactctt 124  Q
    ||||| ||||||||||| ||||  || ||||||||||| ||||| || ||||| || |||||||| |||||||||||  |||||||| ||||||| || |    
T  1625597 taatggccaaaggtacggtttcgtgtcggtccatcaatgtcaatcggggtacccaccacacttgctatttccttcaaaattctctcctgccaatattcct 1625696  T
Q  125 gcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctg 173  Q
    |||||||||| || || || ||||| | |||  |||| |||||||||||    
T  1625697 gcggtaactctacgaatcgaatccagagtgaagcatgggtctgtttctg 1625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 420
Target Start/End: Original strand, 10425557 - 10425734
Alignment:
Q  243 tgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaa 342  Q
    |||||||||||| ||| ||| ||| || | ||||||||||||||||||||| ||||  ||| | ||||||||||||||||| || |||  ||| ||||||    
T  10425557 tgctgcccatatcttccttagatcatcggtcgagtcaaaatgaaagtcatagtaacatttgtcgagaggcaccattttccaaccagccgatgttttccaa 10425656  T
Q  343 gtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaac 420  Q
       || || |||||| | || |  ||||||||  | || ||||| ||||| | |||||||| ||| ||||||||||||    
T  10425657 agtttttcgattttattgcttaagtcacgtgcggagtatggtttatctccctagttaagagtcaaacgagcccttaac 10425734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 22 - 444
Target Start/End: Original strand, 6990 - 7412
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  | ||||| |||||||||||  |||||||||||||||| |    
T  6990 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgcgcttgctatttccttcaaaattctctcccgccaatatt 7089  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  7090 cctgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 7189  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttc 321  Q
     |||||||| || | |||| ||||||||||||||||  | |  || || ||||||||||| |||||||||||||| || ||||| |||||||||||||||    
T  7190 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttc 7289  T
Q  322 catcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcccttaaca 421  Q
    |||||||||  ||| |||||   |||  |||||||  | || ||||||||||||||||| |||||||||||||||||||| | ||| || ||||| ||||    
T  7290 catcctgccgatgttttccataccttgccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggtcaaacgtgccctcaaca 7389  T
Q  422 ccttctgacaatcttctactccc 444  Q
    | ||||  ||||| |||| ||||    
T  7390 cattcttgcaatcctctagtccc 7412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 401
Target Start/End: Original strand, 3729248 - 3729625
Alignment:
Q  24 ataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactct 123  Q
    |||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  ||||||  |||||||||||  |||||||||||||||| |||    
T  3729248 ataatgtccaaaggtacgatttcacgtcggtccatcaatgtcaatcggtgtacctactgcacttgttatttccttcaaaattctctcccgccaatattct 3729347  T
Q  124 tgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccag 223  Q
    ||||||||||||||||| || ||||||| ||| |||||||||| |||||| ||  || |||| |||||||| |||||||||||||| |  ||||||||      
T  3729348 tgcggtaactccaccaatcgaatccaaagtgaaacatgagtctatttctgagcaagatatttgaagtctttggtccattgtgaaaaccgtaacaaaccca 3729447  T
Q  224 gcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttcca 323  Q
    ||||||| || | |||| |||||| |||||||||  | |  || |||||||||||||| |||||||||||||| || ||||| |||||||||||||||||    
T  3729448 gcttgaggttcaccgtgcctgctggccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataatagcctttgcctagaggcaccattttcca 3729547  T
Q  324 tcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaag 401  Q
    |||||||  ||| |||||   |||  |||||||  | || ||||||||||||||||| ||||||||||||||||||||    
T  3729548 tcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaag 3729625  T

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Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 20942362 - 20942675
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || |||||||||||||| |  |||||||    
T  20942362 atgcgagcataatgcccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggtacgttcccgcc 20942461  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||| || |||||||  || |||||||| ||||| ||| ||  || |||||| ||||| |||||||| || || |  ||    
T  20942462 aatactcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaaatctttggtccattgagagaaccgtaa 20942561  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||  |||||||| || || | |||| ||||||||||||| | || |||||| ||| |||||||||| ||||| |||||| ||||||| || ||||||| |    
T  20942562 cagtccaggcttaaggttcaccgtgcctgctgcccatatctgctgtaaatcgtccaccgagtcaaagtgaaaatcataaaaaccctttcctagaggcagc 20942661  T
Q  316 attttccatcctgc 329  Q
    |||||||| |||||    
T  20942662 attttccaacctgc 20942675  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 444
Target Start/End: Complemental strand, 17181506 - 17181367
Alignment:
Q  305 caagaggcaccattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagc 404  Q
    ||||||||||||||||||||||||||  ||| |||||   |||  |||||||  | || ||||||||||||||||| |||||||||||||||||||| |     
T  17181506 caagaggcaccattttccatcctgccgatgttttccatacctttccaattttgttgcttagatcacgtgcaaaatatggtttgtctcctttgttaagggt 17181407  T
Q  405 caaccgagcccttaacaccttctgacaatcttctactccc 444  Q
    ||| || ||||| ||||| ||||  ||||| |||| ||||    
T  17181406 caaacgcgccctcaacacattcttgcaatcctctagtccc 17181367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 9381 - 8966
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||||||||||||  |||| ||||| ||||| ||||||||||||||||| ||||| ||  ||||||| || |||||||| || |||||||||||||    
T  9381 cgagcataatgaccaaacatacggtttctggttgggccatcaatatcaataggtgtacccacatcacttgctatctccttcaaagtcctctcccgccaat 9282  T
Q  119 actcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaa 218  Q
    ||||||||||||| || | ||| ||||||||||  || || |||||||| || ||||||   || ||||||||||| ||||| || ||||||||||| ||    
T  9281 actcttgcggtaattcaatcaaccgtatccaaagcgaaacgtgagtctgcttttgcgccaacaacttaaagtcttttgtccactgagaaaatctcaataa 9182  T
Q  219 accaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccatt 318  Q
    ||| ||||| ||||| || ||| ||| |||||||||||||||||  || || ||||| ||||||||||| |||||  | |||||||||||||| |||||     
T  9181 acctggcttaagattcatagtgcctgttgcccatattttctttaggtcttcagccgaatcaaaatgaaaatcatagaagcccttgccaagaggtaccatc 9082  T
Q  319 ttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagccctta 418  Q
    ||||| || ||| |||| |||||| |     |||||||   || ||||||||| ||| || | || ||||||||||| ||||||| |||  | |||||||    
T  9081 ttccaacccgccgttgttttccaaattgctccaattttggaacgaagatcacgcgcagaaaagggcttgtctcctttattaagagtcaagtgcgccctta 8982  T
Q  419 acaccttctgacaatc 434  Q
    || |||||| ||||||    
T  8981 acgccttcttacaatc 8966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 315 - 454
Target Start/End: Complemental strand, 93830 - 93691
Alignment:
Q  315 cattttccatcctgcctttgtcttccaagtcttatcaattttaatactaagatcacgtgcaaaataaggtttgtctcctttgttaagagccaaccgagcc 414  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  93830 cattttccatcctgccattgtcttccaagtcttatcaattttaatacttagatcacgtgcagaataaggtttgtctcctttgttaagagtcaaccgagcc 93731  T
Q  415 cttaacaccttctgacaatcttctactcccttacggtatt 454  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  93730 cttaacaccttccgacaatcttctactcccttacggtatt 93691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 342
Target Start/End: Complemental strand, 38179 - 37885
Alignment:
Q  48 agttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    |||||| || || |||||||||||||| |||||   |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  38179 agttggcccgtctatatcaataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatc 38080  T
Q  148 caaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctg 247  Q
    ||||  || |||||||| ||||| ||||||   || ||||||||||| ||||||||||| ||||  ||||| ||||| || ||||||| |||| | ||||    
T  38079 caaagcgaaacatgagtttgtttttgcgccaacaacttaaagtcttttgtccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctg 37980  T
Q  248 cccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaa 342  Q
    |||| || ||||||||||| ||| |||| ||||| ||||| |||||| ||||| | || ||||||||||||||||||| |||| | |||||||||    
T  37979 cccaaatgttctttaaatcatccaccgattcaaagtgaaaatcataaaaacccctaccgagaggcaccattttccatcttgccctcgtcttccaa 37885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 48 - 342
Target Start/End: Original strand, 160600 - 160894
Alignment:
Q  48 agttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    |||||| || || |||||||||||||| |||||   |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  160600 agttggcccgtctatatcaataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatc 160699  T
Q  148 caaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctg 247  Q
    ||||  || |||||||| ||||| ||||||   || ||||||||||| ||||||||||| ||||  ||||| ||||| || ||||||| |||| | ||||    
T  160700 caaagcgaaacatgagtttgtttttgcgccaacaacttaaagtcttttgtccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctg 160799  T
Q  248 cccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcctgcctttgtcttccaa 342  Q
    |||| || ||||||||||| ||| |||| ||||| ||||| |||||| ||||| | || ||||||||||||||||||| |||| | |||||||||    
T  160800 cccaaatgttctttaaatcatccaccgattcaaagtgaaaatcataaaaacccctaccgagaggcaccattttccatcttgccctcgtcttccaa 160894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 341
Target Start/End: Original strand, 61288 - 61610
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    ||||||||||| ||||| ||||| |||| ||| ||||||||||||||||| || || |||||  ||||||||||||| ||||| ||||||||||||||||    
T  61288 cgagcataatgtccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaat 61387  T
Q  119 actcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaa 218  Q
    ||||||| |||||||||||||||||||||||||  || ||||| ||||| || || | |||| | || || || |||||||| || || ||||  | |||    
T  61388 actcttgtggtaactccaccaaacgtatccaaagcgatacatgtgtctgcttttgtgtctgatacttgaaatccttagtccactgagagaatcgtagcaa 61487  T
Q  219 accaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccatt 318  Q
    ||| |||||||| || || ||| || |||||||||||||| |  |||| |||||||| |||||  |||| |||||||| ||||| |||||||||||||||    
T  61488 acccggcttgaggttaattgtgcctactgcccatattttcctataatcatccgccgattcaaagagaaaatcataataccccttaccaagaggcaccatt 61587  T
Q  319 ttccatcctgcctttgtcttcca 341  Q
    ||||| || ||| ||||||||||    
T  61588 ttccaaccagccgttgtcttcca 61610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 19591 - 19364
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||||||||| | |||||||||||||||||| || ||||| ||||| || ||||   |||||||||||||||||||||||||||||||||||||     
T  19591 agcataatgaccaaatgcacgatttctagttggtccgtcgatatctataggtgttccaattgcacttgcaatttccttcaaggttctctcccgccaatat 19492  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    |||||||||||||||||||| || |||||||  || |||||||| ||||| || |||  ||  ||||||||||| |||||||| || ||| |||||||||    
T  19491 tcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgtgccaaaagcttaaagtcttttgtccattgagagaatttcaacaaac 19392  T
Q  221 caggcttgagatttatcgtgtctgctgc 248  Q
    |||||||||||| || |||| |||||||    
T  19391 caggcttgagatgtaccgtgcctgctgc 19364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 5802 - 5489
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||| ||||| ||||||||||| || || || |||||||| ||||| ||| ||||||||||||||||||  ||||| |||||||    
T  5802 atgcgagcataatgcccaaaagtacggtttctagttgggccgtctatgtcaataggtgtacccacggcacttgcaatttccttcagagttctttcccgcc 5703  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| || |||||||| || || |||||||  || |||||||| || ||||| | |  ||  |||||||| |||||||||||||| || | |||    
T  5702 aatactcttgaggcaactccactaaccggatccaaagcgaaacatgagtttgcttctgtgtcaaaagcttaaagtccttagtccattgtgagaagcgcaa 5603  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    || ||| ||||| ||||| |  ||| | || ||||| |||||||| |||||||||| ||| |||||||| || || ||| | ||||| ||||| ||||||    
T  5602 cagaccgggcttaagattgacggtgccagcagcccaaattttcttcaaatcctccgacgactcaaaatggaaatcgtaaaaccccttaccaaggggcacc 5503  T
Q  316 attttccatcctgc 329  Q
    |||||||| |||||    
T  5502 attttccaacctgc 5489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 356
Target Start/End: Complemental strand, 12216 - 11876
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| |||| ||||   ||||||||||| |||||||| || ||| ||||||||||||||||||| || | ||||||||    
T  12216 atgcgagcatagtgaccaaatgtacggtttcgagttatcccatcaatatctataggcgtgcctacggcacttgcaatttccttcaatgtacgctcccgcc 12117  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||| |||||||| |||||||  || ||||| || || |||||| ||  || ||| || ||||| |||||||| || || |  ||    
T  12116 aatactcttgcggtaactcaaccaaacgaatccaaaacgatacatgcgtttgcttctgcaccaaaagtttgaaatcttttgtccattgagagaaacgtaa 12017  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||| ||||| ||||| |||| |||| | | |||||| | ||| | ||||||  || |||| ||||| ||||| |||| | | ||||| || ||||| |||    
T  12016 caatccaggtttgaggtttaccgtgccagttgcccagactttttgtaaatcagccaccgattcaaagtgaaaatcatgaaagcccttacctagaggaacc 11917  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaatttt 356  Q
    ||||| ||||||||| | ||||||||| ||||| |||||||    
T  11916 atttttcatcctgccgtcgtcttccaaatcttaccaatttt 11876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 31360 - 31700
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| ||||||||  |||| |||| |||||| ||||||||||| ||||| || |||||| ||||||||||||||||||| || |  |||||||    
T  31360 atgcgagcatagtgaccaaaattacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttcaatgtacattcccgcc 31459  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||| |||||||| |||||||  || ||||| || || || ||| ||   | ||| || ||||| |||||||| || || |  ||    
T  31460 aatactcttgcggtaactcaaccaaacgaatccaaagcgatacatgcgtttgcttttgcaccaagagtttgaaatcttttgtccattgagagaaacgtaa 31559  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||  ||||| |||||||| | ||||   |||||||| | ||| | |||||| ||| |||||||||| ||||| |||| | | ||||| || ||||| |||    
T  31560 cagtccaggtttgagattcaccgtgcaggctgcccagactttttgtaaatcatccaccgagtcaaagtgaaaatcatgaaatcccttacctagaggaacc 31659  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaatttt 356  Q
    ||||||||||||||| | ||||||||| ||||| |||||||    
T  31660 attttccatcctgccgtcgtcttccaaatcttaccaatttt 31700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 40671 - 41011
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| |||| |||||| ||||||||||| ||||| || |||||| ||||||||||||||||| | || |  |||||||    
T  40671 atgcgagcatagtgaccaaaagtacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttctatgtacattcccgcc 40770  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||  |||||||| |||||||  || ||||| || || || ||| ||   | ||| || ||||| |||||||| || || |  ||    
T  40771 aatactcttgcggtaactgaaccaaacgaatccaaagcgatacatgcgtttgcttttgcaccaagagtttgaaatcttttgtccattgagagaaacgtaa 40870  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcacc 315  Q
    ||| ||||| || ||||| | ||||   |||||||| | ||| | |||||| |||  ||| ||||| ||||| |||| | | ||||| || ||||| |||    
T  40871 caatccaggtttaagattaaccgtgcaggctgcccagactttttgtaaatcatccatcgattcaaagtgaaaatcatgaaatcccttacctagaggaacc 40970  T
Q  316 attttccatcctgcctttgtcttccaagtcttatcaatttt 356  Q
    ||||||||||||||| | |||||| || ||||| |||||||    
T  40971 attttccatcctgccgtcgtcttcgaaatcttaccaatttt 41011  T

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Target: scaffold0093 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 10510 - 10188
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    ||||||||||| ||||| ||||| |||| ||| ||||||||||||||||| || || |||||  ||||||||||||| ||||| ||||||||||||||||    
T  10510 cgagcataatgtccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaat 10411  T
Q  119 actcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaa 218  Q
    ||||||| ||||||||||||||| |||||||||  || ||||| ||||  || ||   |||| | || || || |||||||| |  || ||||  | |||    
T  10410 actcttgtggtaactccaccaaatgtatccaaagcgatacatgtgtctacttttgtatctgatacttgaaatccttagtccactaagagaatcgtagcaa 10311  T
Q  219 accaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccatt 318  Q
    ||| |||||||| || || ||| || |||||||||||||| |  |||| |||||||| |||||  |||| ||| |||| ||||| |||||||||||||||    
T  10310 acccggcttgaggttaattgtgcctactgcccatattttcctataatcatccgccgattcaaagagaaaatcaaaataccccttaccaagaggcaccatt 10211  T
Q  319 ttccatcctgcctttgtcttcca 341  Q
    | ||| ||  || ||||||||||    
T  10210 taccaaccaaccattgtcttcca 10188  T

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Target: scaffold0063 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 135 - 327
Target Start/End: Complemental strand, 59627 - 59435
Alignment:
Q  135 caccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagattt 234  Q
    |||||| || ||||||| ||| |||||||||||||| || ||  || |||| |||||||| ||||||||||||||    |||||||| |||||||| ||     
T  59627 caccaatcgaatccaaagtgaaacatgagtctgtttatgagcaagatatttgaagtctttggtccattgtgaaaactgtaacaaacccggcttgaggttg 59528  T
Q  235 atcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggcaccattttccatcct 327  Q
    |  ||| ||||||||||||||||  | |  || || ||| | ||||| |||||||||||||| || ||||| |||||||||||||||||||||    
T  59527 actgtgcctgctgcccatatttttctcaggtcatctgccaaatcaaagtgaaagtcataatagcctttgcctagaggcaccattttccatcct 59435  T

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Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 59714 - 59635
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaa 101  Q
    |||||||| ||||||||||||||||  || ||||||||||| | ||| || ||| | || |||||||| |||||||||||    
T  59714 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgttaatcggtgtatctaccacacttgctatttccttcaa 59635  T

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Target: scaffold0062 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 51095 - 51011
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  51095 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 51011  T

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Target: scaffold0062; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 63634 - 63550
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  63634 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 63550  T

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Target: scaffold0062; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 66031 - 65963
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  66031 cactttcaatttctttcaaagttctttcccgtcaatactcatgcggtaactcaaccaaacgtatccaaa 65963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 148282 - 148387
Alignment:
Q  214 aacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataataacccttgccaagaggca 313  Q
    |||| ||| ||||| ||||| || ||| ||||||||||||||||   ||| ||||||||||| ||| ||||||| || || || || ||||| |||||||    
T  148282 aacagacctggcttaagattaatggtgcctgctgcccatattttgcgtaagtcctccgccgattcataatgaaaatcttagtatcctttgcctagaggca 148381  T
Q  314 ccattt 319  Q
    ||||||    
T  148382 ccattt 148387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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