View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640_low_5 (Length: 290)
Name: NF5640_low_5
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 7398312 - 7398582
Alignment:
| Q |
1 |
agtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7398312 |
agtgtaagtttcaagcatccatggacatagggtcgtttcctatagcctccaaaatattataaggaaaagaaacttcaatatcaatactaccttcttcttc |
7398411 |
T |
|
| Q |
101 |
cccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7398412 |
cccaccaagcacattaactataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtagtaattg |
7398511 |
T |
|
| Q |
201 |
aaccgtggtgaactgcttgctatcaacaaattacttgctggtttacatggctctagtatcgacggcgtttt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
7398512 |
aaccgtggtgaactgcttgctatcaacaaattacttgctgatttaactggctctagtatcgacggcgtttt |
7398582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 39075079 - 39075299
Alignment:
| Q |
17 |
atccatggacatagggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacatta |
116 |
Q |
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||||||||||| | | || ||||| ||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||||| |||||||||||| || |
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| T |
39075079 |
atccatggacagatgatcatttcccatagcctccaaaatatcataaggaagacaaacttgaatatcaacactaccttcttcttcaccaccaagcacaata |
39075178 |
T |
|
| Q |
117 |
actataccaatatttcttttaagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattaccgtaataattgaaccgtggtgaactgc |
216 |
Q |
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| T |
39075179 |
actctaccaatatttcttttaagtccaacaccatttctaactgcaattggcttaccccaaccaaagtcattgccgtaataattgaaccgtggtgaactgc |
39075278 |
T |
|
| Q |
217 |
ttgctatcaacaaattacttg |
237 |
Q |
| |
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| T |
39075279 |
ttgctatcaacaaattacttg |
39075299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 39097552 - 39097621
Alignment:
| Q |
29 |
agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct |
98 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |
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| T |
39097552 |
agggtcatttcccatagcctccaaaatatcataagaaaggcaaacttcaacatcaatactaccttcttct |
39097621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 39087890 - 39087940
Alignment:
| Q |
44 |
agcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttc |
94 |
Q |
| |
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|||||||||||| ||||||| || | |||||||||||||||| |||||||| |
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| T |
39087890 |
agcctccaaaatctcataagaaagacaaacttcaatatcaatgctaccttc |
39087940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 190
Target Start/End: Original strand, 34173992 - 34174146
Alignment:
| Q |
36 |
tttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttcttccccaccaagcacattaactataccaatatttcttt |
135 |
Q |
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||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| |||||| || | | ||||| |||| |||||| ||| |
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| T |
34173992 |
tttccaatagcctccaaaatatcataaggaagacaaacttgaatatcaatactaccttcttccgccccacaaaatatagtaactttaccgatattttttt |
34174091 |
T |
|
| Q |
136 |
taagtccaacaccatttctaactgcaataggcttaccccaaccgaagtcattacc |
190 |
Q |
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||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
34174092 |
gaagtccaaccccattcctaactgcaattggcttaccccaaccaaagtcattacc |
34174146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 8936347 - 8936278
Alignment:
| Q |
29 |
agggtcgtttcctatagcctccaaaatatcataaggaaaagaaacttcaatatcaatactaccttcttct |
98 |
Q |
| |
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|||||| ||||| || ||||||||||| ||||| |||| | |||||| || |||||||||||||||||| |
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| T |
8936347 |
agggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttct |
8936278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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