View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5640_low_9 (Length: 245)
Name: NF5640_low_9
Description: NF5640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5640_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 27680887 - 27680687
Alignment:
| Q |
17 |
aaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacat |
116 |
Q |
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| T |
27680887 |
aaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttagtgtcctctctc-gagtcaagaattaggagtttatat |
27680789 |
T |
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| Q |
117 |
tgaccgatcaatatgcttataaagaaaaaatagcccataatgaaaag-nnnnnnnnngagttggtaatttaaatttaggataggctacaaggtagatgaa |
215 |
Q |
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| T |
27680788 |
tgactaatcaatatgcttataaagaaaaaatagcccataatgaaaagaaaaaaaaaagagttggtaatttaaatttagaataggctacaaggtagatgaa |
27680689 |
T |
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| Q |
216 |
tg |
217 |
Q |
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|| |
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| T |
27680688 |
tg |
27680687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 21891229 - 21891301
Alignment:
| Q |
17 |
aaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctc |
89 |
Q |
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| T |
21891229 |
aaaaaccaaaacctttgtcccccatcccttgaatagttagagatggaagggcagaggcctttggtgtcctctc |
21891301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 46151627 - 46151504
Alignment:
| Q |
8 |
gacatcatcaaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattagg |
107 |
Q |
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| T |
46151627 |
gacaacataaaaaaccaaaacatttgtcccccatcccttgaatagctagggatggaagggaaaatgcctttggtgtcctctc---cagtcaagaattagg |
46151531 |
T |
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| Q |
108 |
agtttacattgaccgatcaatatgctt |
134 |
Q |
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| T |
46151530 |
acctgacatcgactaatcaatatgctt |
46151504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 34660659 - 34660773
Alignment:
| Q |
17 |
aaaaaccaaaacctttgtccctcatcccttgaatagatagagatagaatggcaaaagcttttggtgtcctctctcagagtcaagaattaggagtttacat |
116 |
Q |
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|||||||||||||| |||||| |||||||||||||| ||| ||| ||| |||| | || |||||||||||||| ||||||||||||||| | |||| |
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| T |
34660659 |
aaaaaccaaaacctctgtcccccatcccttgaatagctagggatggaaaggcagaggcctttggtgtcctctc---cagtcaagaattaggacctgacat |
34660755 |
T |
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| Q |
117 |
tgaccgatcaatatgctt |
134 |
Q |
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|||| ||||||||||| |
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| T |
34660756 |
tgactagtcaatatgctt |
34660773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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