View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5641-Insertion-1 (Length: 147)
Name: NF5641-Insertion-1
Description: NF5641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5641-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 16729391 - 16729267
Alignment:
| Q |
23 |
cttcaccatccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatc |
122 |
Q |
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| T |
16729391 |
cttcaccgtccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcataatcgaaatcaaaggaagaagttggaatcgaagtctgaatc |
16729292 |
T |
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| Q |
123 |
gtggtggtgaaatggtttctctcat |
147 |
Q |
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| T |
16729291 |
gtggtggtgaaatcgtttctctcat |
16729267 |
T |
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Back To:
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Target: chr4 (Bit Score: 109; Significance: 3e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 3e-55
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 49946782 - 49946658
Alignment:
| Q |
23 |
cttcaccatccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatc |
122 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49946782 |
cttcaccgtccttcaactcaaaaactgaagtccaaaactgaaatcaaaatcaaagtcataatcgaaatcaaaggaagaagttggaatcgaagtctgaatc |
49946683 |
T |
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| Q |
123 |
gtggtggtgaaatggtttctctcat |
147 |
Q |
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| T |
49946682 |
gtggtggtgaaatcgtttctctcat |
49946658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 24501296 - 24501217
Alignment:
| Q |
66 |
tcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctc |
145 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| | |||||||||||||||||||||||||||| ||||||||| |
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| T |
24501296 |
tcaaaatcaaagtcagaatcgaaatcgaagtaagaagtcgaaatcgaagtcggaatcgtggtggtgaaaacgtttctctc |
24501217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 17009581 - 17009536
Alignment:
| Q |
66 |
tcaaaatcaaagtcagaatcgaaatcaaaggaagaagttggaatcg |
111 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
17009581 |
tcaaaatcaaagtcagaatcgaaatcgaagtaagaagtcggaatcg |
17009536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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