View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5641_low_2 (Length: 281)

Name: NF5641_low_2
Description: NF5641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5641_low_2
NF5641_low_2
[»] chr3 (6 HSPs)
chr3 (9-281)||(53425231-53425506)
chr3 (16-226)||(53309228-53309438)
chr3 (77-207)||(53432440-53432570)
chr3 (9-163)||(48372155-48372312)
chr3 (11-207)||(26097750-26097946)
chr3 (74-161)||(53321068-53321155)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 281
Target Start/End: Original strand, 53425231 - 53425506
Alignment:
Q  9 acatcatctccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgccaacctcgattcag 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425231 acatcaactccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgccaacctcgattcag 53425330  T
Q  109 gagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggtcccatgtccatt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425331 gagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggtcccatgtccatt 53425430  T
Q  209 tctatcccttaccgtgttctccgtt---tcatcgtactcatcaggatcagcgtaataccttgctcctattatcttc 281  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425431 tctatcccttaccgtgttctccgtttcatcatcgtactcatcaggatcagcgtaataccttgctcctattatcttc 53425506  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 53309228 - 53309438
Alignment:
Q  16 ctccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgccaacctcgattcaggagaccc 115  Q
    |||||||  ||||||||| |||||| || ||||| || ||||||||| |||||  |||| | |||||||||||||| || |||||||| ||||  |||||    
T  53309228 ctccatcgaaaatggcattgtcgaacgctgcaaggatcccagagccataacaggaaggaaatcacactttgtaaatcgctaacctcgactcagaggaccc 53309327  T
Q  116 accttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggtcccatgtccatttctatcc 215  Q
    |||||||||||||||| | || ||| |||| ||||||||||||||||| |  |||||||| || || || ||||| ||||| |||||||||| | |||||    
T  53309328 accttttgctgtcccttctgcaagaccatagtatgatgcaccactcacgacattccctgctgctgtcgatgctgtatgggtaccatgtccatatgtatcc 53309427  T
Q  216 cttaccgtgtt 226  Q
    |||||||||||    
T  53309428 cttaccgtgtt 53309438  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 53432440 - 53432570
Alignment:
Q  77 gcacactttgtaaattgccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgca 176  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||  ||||||||||| ||| || | |||||||||||||||||||  ||||| ||     
T  53432440 gcacactttgtaaattgccaacctcgattcaggggacccgccttttgtcgtccctgccgcaagaccaaagtatgatgcaccactcacaacattcccagcc 53432539  T
Q  177 gccgttgaagctgtgtgggtcccatgtccat 207  Q
    || || || ||||||||||| ||||| ||||    
T  53432540 gcggtcgatgctgtgtgggttccatgaccat 53432570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 48372312 - 48372155
Alignment:
Q  9 acatcatctccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagc---acactttgtaaattgccaacctcgatt 105  Q
    |||||| |||||||| |||| |||||||| || || ||||| ||| |||||||||| || |||  |  ||   ||||||||||||| |||||||||||||    
T  48372312 acatcaactccatcagaaattgcatcgtcaaacgccgcaagtatggcagagccagagcaaccaatattgctgcacactttgtaaatcgccaacctcgatt 48372213  T
Q  106 caggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcac 163  Q
    |||| || |||||||||||| ||||| |||||||| |||| |||||||||||||||||    
T  48372212 caggggaaccaccttttgctatcccttccgcgagaccatagtatgatgcaccactcac 48372155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 26097750 - 26097946
Alignment:
Q  11 atcatctccatcataaatggcatcgtcgaatgcagcaagcatgccagagccagaacagccaggagagcacactttgtaaattgccaacctcgattcagga 110  Q
    |||| |||| ||| |||| ||||||||||| || ||||| ||| |||||||||| || |||     ||||||||||||||||| |||||| ||| | ||     
T  26097750 atcaactccgtcagaaattgcatcgtcgaaagccgcaaggatggcagagccagagcaaccaaagttgcacactttgtaaattgacaaccttgatccgggg 26097849  T
Q  111 gacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactcacaaagttccctgcagccgttgaagctgtgtgggtcccatgtccat 207  Q
    || ||||||||||| || ||||| || ||| || | ||||||||||||||||| | |||||| || || ||||| ||||||||||| ||||| ||||    
T  26097850 gatccaccttttgccgttcctgctgcaagaccaaagtatgatgcaccactcacgacgttccccgccgcggttgacgctgtgtgggttccatgcccat 26097946  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 53321068 - 53321155
Alignment:
Q  74 agagcacactttgtaaattgccaacctcgattcaggagacccaccttttgctgtccctgccgcgagatcataatatgatgcaccactc 161  Q
    |||||||||||||||||| |||||||| |||| ||||||||| ||||||| |||||||   || ||| | || |||||||||||||||    
T  53321068 agagcacactttgtaaatcgccaaccttgattgaggagaccccccttttgatgtcccttttgcaagaccgtagtatgatgcaccactc 53321155  T

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