View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5642-Insertion-1 (Length: 612)

Name: NF5642-Insertion-1
Description: NF5642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5642-Insertion-1
NF5642-Insertion-1
[»] chr3 (1 HSPs)
chr3 (8-612)||(48894124-48894732)


Alignment Details
Target: chr3 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 612
Target Start/End: Complemental strand, 48894732 - 48894124
Alignment:
Q  8 ttaagttgtacggagagacacaaatcaactgcaaagggttcagagaatgaatacacagtagaatcagtgagagcatctttaattagacaagaggatacaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48894732 ttaagttgtacggagagacacaaatcaactgcaaagggttcagagaatgaatacacagttgaatcagtgagagcatctttaattagacaagaggatacaa 48894633  T
Q  108 tcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatgcttccattcctcacttttctggctccttgctcga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48894632 tcatatttagtgtgattgagagagcaagattcccacttaattctcccacctaccatcaacattatgcttccattcctcacttttctggctccttgctcga 48894533  T
Q  208 tgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaattacagatattatttatttcctctcatatttgaacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48894532 tgtcgttcttgactatacagaagccattcaagccaaggtagttgctacttcctaccttgcttaattacagatattatttatttcctctcatatttgaacc 48894433  T
Q  308 ggtaattttttatgataacaatttgtattagaatttattggccttcacttgtgtgtttttggtgattgttctactgaccacatcttcctactcnnnnnnn 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  48894432 ggtaattttttatgataacaatttgtattagaatttattggccttcacttgtgtgtttttggtgattgttctaatgaccacatcttcctactcttttttt 48894333  T
Q  408 cttatcctctggtccnnnnnnnggtaaggttgaacaacatgaagaacttatttagagcaattatctg-------nnnnnnnnnnnnatacctatgcatgt 500  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||    
T  48894332 cttatcctctggtcctttttttggtaaggttgaacaacatgaagaacttatttagagcaattatctgtgttttttttttcttttttttacctatgcatgt 48894233  T
Q  501 gtatgtgtatgnnnnnnnnngttgttaaatagccggaattcaacnnnnnnnnnaaggtgaataagttgggatttaaggtttgaactccgacccctatata 600  Q
    |||||||||||          |||| ||||||||||||||||||         |||||||||||||||| |||| ||||| |||||||||||||||||||    
T  48894232 gtatgtgtatgttttttt---ttgtcaaatagccggaattcaactttttttttaaggtgaataagttggtatttgaggttcgaactccgacccctatata 48894136  T
Q  601 taacaatgcatg 612  Q
    ||||||||||||    
T  48894135 taacaatgcatg 48894124  T

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