View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5642-Insertion-3 (Length: 650)

Name: NF5642-Insertion-3
Description: NF5642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5642-Insertion-3
NF5642-Insertion-3
[»] chr5 (6 HSPs)
chr5 (8-553)||(2524586-2525130)
chr5 (583-634)||(2525153-2525204)
chr5 (248-300)||(36822329-36822381)
chr5 (248-301)||(34000566-34000618)
chr5 (248-314)||(30893928-30893993)
chr5 (248-316)||(4009861-4009929)
[»] chr3 (4 HSPs)
chr3 (246-312)||(12043099-12043165)
chr3 (251-313)||(47377351-47377412)
chr3 (252-293)||(36476357-36476398)
chr3 (251-319)||(43334508-43334575)
[»] scaffold0262 (1 HSPs)
scaffold0262 (248-317)||(15928-15996)
[»] chr4 (3 HSPs)
chr4 (248-313)||(19731131-19731196)
chr4 (248-316)||(43034341-43034408)
chr4 (248-293)||(8690208-8690253)
[»] chr2 (2 HSPs)
chr2 (248-325)||(35456810-35456887)
chr2 (251-317)||(19156162-19156227)
[»] chr1 (4 HSPs)
chr1 (244-325)||(3157707-3157787)
chr1 (248-317)||(33020041-33020109)
chr1 (253-298)||(45224296-45224340)
chr1 (268-316)||(22335373-22335420)
[»] chr6 (3 HSPs)
chr6 (248-316)||(8917594-8917662)
chr6 (251-312)||(3863336-3863397)
chr6 (248-316)||(23629836-23629903)
[»] scaffold0334 (1 HSPs)
scaffold0334 (263-325)||(5192-5253)
[»] chr8 (5 HSPs)
chr8 (248-314)||(13357442-13357507)
chr8 (252-293)||(7314731-7314772)
chr8 (248-325)||(10752403-10752480)
chr8 (248-316)||(27044889-27044957)
chr8 (248-324)||(33373743-33373818)
[»] chr7 (1 HSPs)
chr7 (248-300)||(48065197-48065248)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 553
Target Start/End: Original strand, 2524586 - 2525130
Alignment:
Q  8 ggtgcatggtgaaattctgtggcagctagaaatgcatacatgttgaaatttgaaagtgaggataagcaaataattaaatatcgaaactatcacatnnnnn 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  2524586 ggtgcatggtgaaattctgtggcagctaaaaatgcatacatgttgaaatttgaaagtgaggataagcaaataattaaatatcgaaactatcacataaaaa 2524685  T
Q  108 nnn-----------cgaaattatgtatatcaatcaatatgatctttatgtataatactagcacatactacgactagtgcttcactattcattgtaaaata 196  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||    
T  2524686 ataaaaataaaaaacgaaattatgtatatcaatcaatatgatctttatgtataatactagcacatacta------gtgcttcactattcattgtaaaata 2524779  T
Q  197 caatttatttggttagtattttctcccttttttaaacaaccgttagatatatcctcgtgagcataactcaattggcaaggacaattcattaatatataca 296  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||    
T  2524780 caatttatttggttagtattttctcccttttttaaacaatcattagatatgtcatcgtgagcataactcaattgtcaaggacaatgcattaatatataca 2524879  T
Q  297 aggtatgaggttcaaaccccaactaccacnnnnnnnnnnnnnnnncattagatatggtttgaaaatgtgtatataagtggtgaaaagtattcgtcttata 396  Q
    ||||||| | |||||| |||||| |||||                ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2524880 aggtatgggattcaaatcccaaccaccacaaaaaaaaaaaat---cattagatatgatttgaaaatgtgtatataaatggtgaaaagtattcgtcttata 2524976  T
Q  397 aatcaattttgtatgactgtgttcgaatcaaaattctaatatgatgatacatctactattcattggatcacctattattaagtcgcccctatcgactgtg 496  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2524977 aatcaattttgtatgattgggttcgaatcaaaattctaatatgatgatacatctactattcattggatcacctattattaagtcgcccctatcgactgtg 2525076  T
Q  497 ttctaaatttccggtcctaaacatgcatttatagtgtgttaagagcggtacatttat 553  Q
    |||||||| ||||||||||| |||||||   |||| ||||||||| |||||||||||    
T  2525077 ttctaaatgtccggtcctaagcatgcat---tagtatgttaagagtggtacatttat 2525130  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 583 - 634
Target Start/End: Original strand, 2525153 - 2525204
Alignment:
Q  583 cggtattcgatctaaggatcgtctaatttgagaggtctaattccaccatcca 634  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  2525153 cggtattcgatctaaggaccgtctaatttaagaggtctaattccaccatcca 2525204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 36822381 - 36822329
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggt 300  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||| ||||||    
T  36822381 tcctcgtgagcttaactcaattggtaaggacaatgcattaatatatgcaaggt 36822329  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 34000566 - 34000618
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggta 301  Q
    |||||||||||||||||||||||| | ||||||| || ||||||||||||||||    
T  34000566 tcctcgtgagcataactcaattggtatggacaataca-taatatatacaaggta 34000618  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 30893928 - 30893993
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacc 314  Q
    ||||||||||| ||||||| || | || |||||| ||| ||||||| ||||||||||||||||||||    
T  30893928 tcctcgtgagcttaactcagtttgtaaagacaatgcat-aatatatgcaaggtatgaggttcaaacc 30893993  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 4009861 - 4009929
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    ||||||||||| || |||| |||| ||||||||| ||||||||||| |||||   | ||||||||||||    
T  4009861 tcctcgtgagcttagctcagttggtaaggacaatgcattaatatatgcaagggccggggttcaaacccc 4009929  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 246 - 312
Target Start/End: Complemental strand, 12043165 - 12043099
Alignment:
Q  246 tatcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaa 312  Q
    ||||||||||||| ||||||| |||| ||||||||| ||||||||||| ||||||  ||||||||||    
T  12043165 tatcctcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaaggttcgaggttcaaa 12043099  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 313
Target Start/End: Complemental strand, 47377412 - 47377351
Alignment:
Q  251 tcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaac 313  Q
    |||||||| ||||||| |||| ||||||||| ||| ||||||||||||||  |||||||||||    
T  47377412 tcgtgagcttaactcagttggtaaggacaatgcat-aatatatacaaggttcgaggttcaaac 47377351  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 36476357 - 36476398
Alignment:
Q  252 cgtgagcataactcaattggcaaggacaattcattaatatat 293  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  36476357 cgtgagcataactcaattggcacggacaatgcattattatat 36476398  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 251 - 319
Target Start/End: Complemental strand, 43334575 - 43334508
Alignment:
Q  251 tcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaac 319  Q
    |||||||| |||||||  ||| |||||| || ||| |||||||||||||| |||| |||||||||||||    
T  43334575 tcgtgagcttaactcagctggtaaggaccatgcat-aatatatacaaggtctgagattcaaaccccaac 43334508  T

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Target: scaffold0262 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 15996 - 15928
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccca 317  Q
    ||||||||||| |||||||||||| |||||||||  | |||||||| |||||| || |||||||||||||    
T  15996 tcctcgtgagcttaactcaattggtaaggacaatgta-taatatatgcaaggtctggggttcaaacccca 15928  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 19731196 - 19731131
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaac 313  Q
    ||||||||||| || ||||||||| ||||||||| ||||||||||| ||||||  | |||||||||    
T  19731196 tcctcgtgagcttagctcaattggtaaggacaatgcattaatatatgcaaggttcggggttcaaac 19731131  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 43034408 - 43034341
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    ||||||||||| ||||||| |||| | ||||||| ||| ||||||| |||||| |||||||||||||||    
T  43034408 tcctcgtgagcttaactcagttggtatggacaatgcat-aatatatgcaaggtctgaggttcaaacccc 43034341  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 8690208 - 8690253
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatat 293  Q
    |||||||||||||| |||| |||||||||||||| ||||| |||||    
T  8690208 tcctcgtgagcatagctcagttggcaaggacaatgcattattatat 8690253  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 35456887 - 35456810
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaactaccac 325  Q
    ||||||||||| || |||| |||| ||| ||||| ||||||||||| ||||||  | ||||||||||||||| |||||    
T  35456887 tcctcgtgagcttagctcagttggtaagaacaatgcattaatatatgcaaggttcggggttcaaaccccaaccaccac 35456810  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 251 - 317
Target Start/End: Complemental strand, 19156227 - 19156162
Alignment:
Q  251 tcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccca 317  Q
    |||||||| || ||||||||| ||||||| | ||| ||||||| |||||| ||||||||||||||||    
T  19156227 tcgtgagcttagctcaattggtaaggacagtacat-aatatatgcaaggtttgaggttcaaacccca 19156162  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 3157787 - 3157707
Alignment:
Q  244 tatatcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaactaccac 325  Q
    ||||||||||||||| || ||||||| |   | ||||| || ||||||||||||||| |||||||||||||||||| |||||    
T  3157787 tatatcctcgtgagcttagctcaattagtttgaacaatgca-taatatatacaaggtttgaggttcaaaccccaaccaccac 3157707  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 33020109 - 33020041
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccca 317  Q
    ||||||||||| || ||||| ||| | ||||||| ||| ||||||| |||||| ||||||||||||||||    
T  33020109 tcctcgtgagcttagctcaactggtagggacaatgcat-aatatatgcaaggtctgaggttcaaacccca 33020041  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 298
Target Start/End: Complemental strand, 45224340 - 45224296
Alignment:
Q  253 gtgagcataactcaattggcaaggacaattcattaatatatacaag 298  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    
T  45224340 gtgagcttaactcaattggtaaggacaattca-taatatatacaag 45224296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 22335373 - 22335420
Alignment:
Q  268 ttggcaaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    |||||||||||||| ||| ||||||| |||||| |||||||||||||||    
T  22335373 ttggcaaggacaatgcat-aatatatgcaaggtctgaggttcaaacccc 22335420  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 8917594 - 8917662
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    ||||||||||| ||||||| || | ||||||||| |||||||||||  ||||| || ||||||||||||    
T  8917594 tcctcgtgagcttaactcagttagtaaggacaatacattaatatatgtaaggtctggggttcaaacccc 8917662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 3863397 - 3863336
Alignment:
Q  251 tcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaa 312  Q
    |||||||| ||||||| |||| ||||||||| ||||||||||| ||| || || ||||||||    
T  3863397 tcgtgagcttaactcagttggtaaggacaatgcattaatatatgcaacgtctggggttcaaa 3863336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 23629903 - 23629836
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    ||||||||| | || ||||||||| || |||||| ||| ||||||| |||||||||| |||||||||||    
T  23629903 tcctcgtgaacttagctcaattggtaatgacaatgcat-aatatatgcaaggtatgaagttcaaacccc 23629836  T

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Target: scaffold0334 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 5192 - 5253
Alignment:
Q  263 ctcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaactaccac 325  Q
    ||||||||| | ||||||| ||| ||||||| |||||| |||||||||||||||||| |||||    
T  5192 ctcaattggtatggacaatgcat-aatatatgcaaggtctgaggttcaaaccccaaccaccac 5253  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 314
Target Start/End: Complemental strand, 13357507 - 13357442
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaacc 314  Q
    ||||||||||| ||||||| |||| | ||||||| ||| ||||||| ||||||| ||||||||||||    
T  13357507 tcctcgtgagcttaactcagttggtatggacaatgcat-aatatatgcaaggtacgaggttcaaacc 13357442  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 7314731 - 7314772
Alignment:
Q  252 cgtgagcataactcaattggcaaggacaattcattaatatat 293  Q
    |||||||||||||||||||||| ||||||| ||||| |||||    
T  7314731 cgtgagcataactcaattggcagggacaatacattattatat 7314772  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Original strand, 10752403 - 10752480
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaactaccac 325  Q
    ||||||||||| || |||| |||| ||||||||  |||| |||||| |||||| || |||||||||||| || |||||    
T  10752403 tcctcgtgagcttagctcagttggtaaggacaaaacattgatatattcaaggtctggggttcaaaccccgaccaccac 10752480  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 27044957 - 27044889
Alignment:
Q  248 tcctcgtgagcataactcaattggc-aaggacaattcattaatatatacaaggtatgaggttcaaacccc 316  Q
    ||||||||||| || |||||||||  ||||||||||||| |||||||  ||||| |||||||||||||||    
T  27044957 tcctcgtgagcttagctcaattgggtaaggacaattcat-aatatatgtaaggtctgaggttcaaacccc 27044889  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 33373818 - 33373743
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggtatgaggttcaaaccccaactacca 324  Q
    ||||||||| | ||||||| |||| | ||||||||||| |||||||  ||||| || ||||||||||||||| ||||    
T  33373818 tcctcgtgaccttaactcagttggtatggacaattcat-aatatatgtaaggtctggggttcaaaccccaacaacca 33373743  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 48065197 - 48065248
Alignment:
Q  248 tcctcgtgagcataactcaattggcaaggacaattcattaatatatacaaggt 300  Q
    ||||||||||| |||||||||||| | |||||||||| |||||||| ||||||    
T  48065197 tcctcgtgagcttaactcaattggtatggacaattca-taatatatgcaaggt 48065248  T

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