View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5642_high_1 (Length: 477)
Name: NF5642_high_1
Description: NF5642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5642_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 2524148 - 2524590
Alignment:
| Q |
14 |
atcatgttggttttttgggcattatttagagtttggacccagttgaaaactcattcatcatctcttgagtcctgtgtggacattcaattaattatctttg |
113 |
Q |
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| T |
2524148 |
atcatgttggttttttgggcattatttagagtttggacccagttgaaaactcattcatcatctcttgagtcctgtg--gacattcaattaattatctttg |
2524245 |
T |
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| Q |
114 |
tctcatattcgtttgttttagaaggggacaacttatattagtgtaatgatatgatggaaacaagattaattgtaataaatccagaacatgttacttcttc |
213 |
Q |
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| T |
2524246 |
tctcatattcgtttgttttagaaggggacaacttatattagtgtaatgatatgatggaaacaagattaattgtaataaatccagaacatgttacttcttc |
2524345 |
T |
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| Q |
214 |
atagagaattcaaattgaaggacgtttgaagataagtgatggggatggagaagatgaggacaaatttgacctttgatagttgaattgcttatgtttctct |
313 |
Q |
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| T |
2524346 |
atagagaattcaaattgaaggacgtttgaagataagtgatggggagggagaagatgaggacaaatttgacctttgatagttgaattgcttatgtttctct |
2524445 |
T |
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| Q |
314 |
ttctaagatggataacttggtggttaaacacatcttgacactgatgattgatgtaagatatctccaatatttaagctagaacattttcaacatggacatt |
413 |
Q |
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| T |
2524446 |
ttctaagatggataacttggtggttaaacacatcttgacactgatgattgatgtaagatatctccaata-ttaagctagaacattttcaacatggacatt |
2524544 |
T |
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| Q |
414 |
gtactcaggatacggttggtcatattcgtataataagtaatggtgc |
459 |
Q |
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| T |
2524545 |
gtactcaggatacggttggtcatattcgtataataagtaatggtgc |
2524590 |
T |
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