View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5642_low_4 (Length: 246)
Name: NF5642_low_4
Description: NF5642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5642_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5724042 - 5724291
Alignment:
| Q |
1 |
ttttcaatttca-aaacaataacataaagttttcaaactttgaattttattataccataagctcactccaaccaatgaggaagagacacctgttacttgt |
99 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5724042 |
ttttcaatttcataaacaataacataaagttctcaaactttgaattttattacaccatgagctcactccaaccaatgaggaagagacacatgttacttgt |
5724141 |
T |
|
| Q |
100 |
agtgc-----aagcaactatagtgtagtacaatctaagtagattagtagtacaattcctattgtatatatacccttgtactctattcaatcaatctaatg |
194 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5724142 |
agtacaagctaagcaactatagtgtagtacaatctaagtagattagtagcacaattcttattgtgtatatacccgtgtactctattcattcaatctaatg |
5724241 |
T |
|
| Q |
195 |
gaaaatattctttgtttctagtttaataataaatttctatgttcatttct |
244 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
5724242 |
gaaaatattatttgtttctagtttcataataaatttctgtgttcatttct |
5724291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5672050 - 5672096
Alignment:
| Q |
1 |
ttttcaatttca-aaacaataacataaagttttcaaactttgaattt |
46 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
5672050 |
ttttcaatttcataaacaataacataaaattttcaaactttgaattt |
5672096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5693824 - 5693870
Alignment:
| Q |
1 |
ttttcaatttca-aaacaataacataaagttttcaaactttgaattt |
46 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
5693824 |
ttttcaatttcataaacaataacataaaattttcaaactttgaattt |
5693870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 9651827 - 9651686
Alignment:
| Q |
93 |
tacttgtagtgcaagcaactatagtgtagtacaatctaagtagattagtagtacaattcctattgtatatat--acccttgtactctattcaatcaatct |
190 |
Q |
| |
|
|||||| ||| |||| |||| || ||||||||||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
9651827 |
tacttgcagtacaagtaactgtaatgtagtacaatcttagtagattgatagtacaattcacattgtatatatacactcttgtactctatt-gttcaatct |
9651729 |
T |
|
| Q |
191 |
aatggaaaatattctttgtttc-tagtttaataataaatttct |
232 |
Q |
| |
|
||| ||||||| |||||||||| |||||| ||||||| ||||| |
|
|
| T |
9651728 |
aatagaaaataatctttgtttcttagtttcataataattttct |
9651686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 9651918 - 9651865
Alignment:
| Q |
44 |
ttttattataccataagctcactccaaccaatgaggaagagacacctgttactt |
97 |
Q |
| |
|
|||||||| ||||| |||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
9651918 |
ttttattacaccatgagcttactccaactaatgaggaagagacacctgttactt |
9651865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 163
Target Start/End: Complemental strand, 26719403 - 26719307
Alignment:
| Q |
68 |
caaccaatgaggaagagacacctgttacttgtagtgcaagcaactatagtgtagtac-aatctaagtagattagtagtacaattcctattgtatata |
163 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||| ||||| |||||| || ||||| ||||| ||| ||||||| |||| ||||||||| |
|
|
| T |
26719403 |
caaccaatagggaagagacacctattacttgtagtacaagtaactactgtgtaggacaaatcttagtagcttaatagtacatttccatttgtatata |
26719307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University