View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5643-Insertion-1 (Length: 142)

Name: NF5643-Insertion-1
Description: NF5643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5643-Insertion-1
NF5643-Insertion-1
[»] chr5 (3 HSPs)
chr5 (8-83)||(27237057-27237132)
chr5 (8-83)||(27215454-27215534)
chr5 (8-83)||(27201181-27201259)


Alignment Details
Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 27237057 - 27237132
Alignment:
Q  8 tgttctccttttccagtatgccattttcaacagatagtagtttaccctatacaccaagccaagtcaatcattccat 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27237057 tgttctccttttccaatatgccattttcaacagatagtagtttaccctatacaccaagccaagtcagtcattccat 27237132  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 27215454 - 27215534
Alignment:
Q  8 tgttctccttttccagtatgccattttcaacagatagtagtttacccta-----tacaccaagccaagtcaatcattccat 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||||||    
T  27215454 tgttctccttttccaatatgccattttcaacagatagtagtttaccctatggtttacaccaagccaagtcagtcattccat 27215534  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 27201181 - 27201259
Alignment:
Q  8 tgttctccttttccagtatgccattttcaacagatagtagtttacccta-----tacaccaagccaagtcaatcattccat 83  Q
    ||||||||||||||| |||||||||  ||||||||||||||||||||||     ||||||||||||||||| |||||||||    
T  27201181 tgttctccttttccaatatgccatt--caacagatagtagtttaccctatggtttacaccaagccaagtcagtcattccat 27201259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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