View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5643_high_2 (Length: 311)
Name: NF5643_high_2
Description: NF5643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5643_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 7427327 - 7427095
Alignment:
| Q |
19 |
aacttgttacaaaaaactcattgattatattcatagttttgggaaaagagtgagttaacggaggaaagtaagcgtaaggctcgagactaaaatgtggaag |
118 |
Q |
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| T |
7427327 |
aacttgttaccaaaaacacattcataatattcatagttttgggaaaagagggagttaacggaggaaagtaagcgtaaggctcgagactaaaatgtggaag |
7427228 |
T |
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| Q |
119 |
ctgcgatgagaaattgcatcactaaatcatttccttcgtctcaataaaatacaattagacacatcaatctcagtatgattaaagttgttattgaccaccc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7427227 |
ctgcgatgagaaattgcatcactaaatcatttccttcgtctcaataaaatacaattagacacatcaatctcagtatgattaaa---gttattgaccaccc |
7427131 |
T |
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| Q |
219 |
tattgttgtgtgttaagggtgagttagaaaaagtat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7427130 |
tattgttgtgtgttaagggtgagttagaaaaagtat |
7427095 |
T |
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