View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5643_low_2 (Length: 393)
Name: NF5643_low_2
Description: NF5643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5643_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 36142588 - 36142375
Alignment:
| Q |
16 |
ttttacgtaatacatgcgtgtctatgatcaagaacgacataagctttgaaatcggagttgtgaagaatgctatagcccaccaaacttaatcatagctatc |
115 |
Q |
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| T |
36142588 |
ttttacgtaatacatgcgtgtctatgatcaagaacgacataagctttgaaatcggagttgtgaagaatgctatagcccaccaaacttaatcatagctatc |
36142489 |
T |
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| Q |
116 |
ctatgtggatgatttagccacgttgtccaaatgaggctgagtattatttattttctttcaactnnnnnnnngtagaatattcggtcaaaataaaaacgaa |
215 |
Q |
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| T |
36142488 |
ctatgtggatgatttagccacgttgtccaaatgaggctgagtattatttattttctttcaactaaaaaaaagtagaatattcggtcaaaataaaaacgaa |
36142389 |
T |
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| Q |
216 |
aaggagaattgagg |
229 |
Q |
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| T |
36142388 |
aaggagaattgagg |
36142375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 36142322 - 36142230
Alignment:
| Q |
282 |
gtgaaggttaacatagtaaatcagaattcttcttctgagtattgaacgcatatcactaagaatgaagaaccatttttcaaccaagtcattttt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36142322 |
gtgaaggttaacatagtaaatcagaattcttcttctgagtattgaacgcatatcactaagaatgaagaaccatttttcaaccaagtcattttt |
36142230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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