View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5644-Insertion-1 (Length: 261)

Name: NF5644-Insertion-1
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5644-Insertion-1
NF5644-Insertion-1
[»] chr8 (4 HSPs)
chr8 (8-133)||(20226546-20226671)
chr8 (140-261)||(38640646-38640767)
chr8 (140-258)||(43658920-43659038)
chr8 (135-227)||(43654317-43654409)
[»] chr7 (4 HSPs)
chr7 (8-133)||(44311058-44311183)
chr7 (140-261)||(41455374-41455495)
chr7 (140-261)||(41451690-41451812)
chr7 (140-261)||(32355247-32355368)
[»] scaffold0067 (1 HSPs)
scaffold0067 (140-261)||(7980-8101)
[»] chr4 (5 HSPs)
chr4 (140-261)||(6799134-6799255)
chr4 (137-243)||(8986601-8986709)
chr4 (140-243)||(42528325-42528420)
chr4 (140-261)||(8996077-8996200)
chr4 (154-213)||(6806927-6806985)
[»] chr2 (5 HSPs)
chr2 (146-261)||(8363309-8363424)
chr2 (140-218)||(8365589-8365667)
chr2 (134-243)||(27529112-27529221)
chr2 (210-261)||(33358004-33358055)
chr2 (144-230)||(40862766-40862852)
[»] chr3 (5 HSPs)
chr3 (140-259)||(28703675-28703794)
chr3 (140-205)||(32893713-32893778)
chr3 (141-243)||(36611959-36612062)
chr3 (186-261)||(8878851-8878926)
chr3 (214-261)||(32893791-32893838)
[»] chr1 (4 HSPs)
chr1 (135-259)||(47323278-47323399)
chr1 (135-243)||(47326868-47326976)
chr1 (135-261)||(13016347-13016473)
chr1 (140-181)||(291365-291406)
[»] chr6 (2 HSPs)
chr6 (140-261)||(27074982-27075105)
chr6 (140-260)||(27078346-27078468)
[»] chr5 (3 HSPs)
chr5 (135-261)||(40254869-40254992)
chr5 (140-261)||(26050015-26050138)
chr5 (140-261)||(26053429-26053552)
[»] scaffold0012 (1 HSPs)
scaffold0012 (186-259)||(206191-206264)


Alignment Details
Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 20226546 - 20226671
Alignment:
Q  8 aaagctttgcaaacttgttttgaattgaagggaatgaatatactacaattatgttgattattgtgcttatatacaaagataaatcaatcaactaactagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  20226546 aaagctttgcaaacttgttttgaattgaagggaatgaatatactacaattgtgttgattattgtgcttatatacaaagacaaatcaatcaacgaactagc 20226645  T
Q  108 taaaaatcttaacgaacttctaactg 133  Q
    ||||||||||||||||||||||||||    
T  20226646 taaaaatcttaacgaacttctaactg 20226671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 38640646 - 38640767
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38640646 ggatgactgaaggatcacaacctgcaaaataataaaataaaacgtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgtgc 38640745  T
Q  240 aactatcccagagtacaacagg 261  Q
    ||||  ||||||||||||||||    
T  38640746 aactcccccagagtacaacagg 38640767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 43659038 - 43658920
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    |||| |||||||||||||||||| |||||||||||||| ||| |||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||||    
T  43659038 ggataactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcatgacaatgtcactaaactaaggaattatccgcagaattgcgc 43658939  T
Q  240 aactatcccagagtacaac 258  Q
    ||||  |||||||||||||    
T  43658938 aactcccccagagtacaac 43658920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 43654409 - 43654317
Alignment:
Q  135 ttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatcc 227  Q
    |||| ||||||||||||||||||||||| |||||||||||||| |||  |||||| ||||||||||| |||||||||||||||||||||||||    
T  43654409 ttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacataaaacatgaggcgtgacaatgtcactgaactaaggaattatcc 43654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 44311058 - 44311183
Alignment:
Q  8 aaagctttgcaaacttgttttgaattgaagggaatgaatatactacaattatgttgattattgtgcttatatacaaagataaatcaatcaactaactagc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  44311058 aaagctttgcaaacttgttttgaattgaagggaatgaatatactacaattgtgttgattattgtgcttatatacaaagacaaatcaatcaacgaactagc 44311157  T
Q  108 taaaaatcttaacgaacttctaactg 133  Q
    ||||||||||||||||||||||||||    
T  44311158 taaaaatcttaacgaacttctaactg 44311183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 41455374 - 41455495
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455374 ggatgactgaaggatcataacctacaaaacaagaaaataaaaagtaaaatctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 41455473  T
Q  240 aactatcccagagtacaacagg 261  Q
    ||||  |||| |||||||||||    
T  41455474 aactcccccaaagtacaacagg 41455495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 41451690 - 41451812
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  41451690 ggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacatgaggcgtgactatgtcactaaactaaggaattatccgcagaattgtgc 41451789  T
Q  240 aact-atcccagagtacaacagg 261  Q
    ||||   ||||||||||||||||    
T  41451790 aactccccccagagtacaacagg 41451812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 32355368 - 32355247
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||||||| |||    
T  32355368 ggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggcgtgacaatatcactgaactaagaaattattcgcagaattacgc 32355269  T
Q  240 aactatcccagagtacaacagg 261  Q
    ||||   |||||||||||||||    
T  32355268 aacttctccagagtacaacagg 32355247  T

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Target: scaffold0067 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 8101 - 7980
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  8101 ggatgacggaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggtgtgactatgtcactgaactaaggaattatccgcaaaattgcgc 8002  T
Q  240 aactatcccagagtacaacagg 261  Q
    ||||  ||||||||||||||||    
T  8001 aactcccccagagtacaacagg 7980  T

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Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 6799255 - 6799134
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6799255 ggatgactgaaggatcacaacctgcaaaataagaaaataaaaagtaaaacctgtggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 6799156  T
Q  240 aactatcccagagtacaacagg 261  Q
     |||  |||| ||||| |||||    
T  6799155 gactcccccaaagtactacagg 6799134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 243
Target Start/End: Original strand, 8986601 - 8986709
Alignment:
Q  137 cgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgacta--tgtcactgaactaaggaattatccgcagaat 234  Q
    |||||||||| ||||||||||| ||| ||||||||  |||||||| |||||| ||||||||||||||  |||||||| |||||||||||||||| |||||    
T  8986601 cgtggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacgtaaaatctgaggcgtgactacgtgtcactggactaaggaattatccgtagaat 8986700  T
Q  235 tgcgcaact 243  Q
    |||||||||    
T  8986701 tgcgcaact 8986709  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 42528325 - 42528420
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    ||||||||||||||||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||        |||||||||||| ||||||||||||    
T  42528325 ggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaacttgaggcgtgactatgt--------taaggaattatctgcagaattgcgc 42528416  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 8996077 - 8996200
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgacta--tgtcactgaactaaggaattatccgcagaattgc 237  Q
    ||||||||||||||||||| ||| ||||||||  |||||||| |||||| || ||| |||| ||  |||||||| |||||||||||||||||||||||||    
T  8996077 ggatgactgaaggatcacatcctgcaaaacaatgaaataaaacgtaaaatctaaggtgtgattacgtgtcactggactaaggaattatccgcagaattgc 8996176  T
Q  238 gcaactatcccagagtacaacagg 261  Q
     |||||  |||| | |||||||||    
T  8996177 acaactcccccaaaatacaacagg 8996200  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 6806985 - 6806927
Alignment:
Q  154 tcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaa 213  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6806985 tcacaacctacaaaacaagaaaataaaa-gtaaaacctgaggcgtgactatgtcactgaa 6806927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 8363424 - 8363309
Alignment:
Q  146 ctgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactat 245  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  8363424 ctgaaggatcacaacctgcaaaacaagaaaatgaaaggtaaaacctgatgcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactcc 8363325  T
Q  246 cccagagtacaacagg 261  Q
     |||||||||||||||    
T  8363324 tccagagtacaacagg 8363309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 8365667 - 8365589
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaag 218  Q
    |||||||||||||||||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||    
T  8365667 ggatgactgaaggatcacaacctgaaaaacaagaacatgaaaaataaaacctgaggcgtgactatgtcactgaactaag 8365589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 27529221 - 27529112
Alignment:
Q  134 tttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaa 233  Q
    ||||| ||||||| ||| |||||||| ||||||||||| |||||  ||| | |||  ||||||||||||| ||||||  |||||||||||||||||| ||    
T  27529221 tttcgcggatgaccgaatgatcacaaactacaaaacaataaaatgtaaactgaaaaatgaggcgtgactacgtcactagactaaggaattatccgcataa 27529122  T
Q  234 ttgcgcaact 243  Q
    |||| |||||    
T  27529121 ttgcacaact 27529112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 33358055 - 33358004
Alignment:
Q  210 tgaactaaggaattatccgcagaattgcgcaactatcccagagtacaacagg 261  Q
    ||||||||||||||||||| ||||||||||||||   |||||||||||||||    
T  33358055 tgaactaaggaattatccgtagaattgcgcaactcctccagagtacaacagg 33358004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 40862766 - 40862852
Alignment:
Q  144 gactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgca 230  Q
    ||||||| |||||||||||| ||||||| |||||  |||||||||  ||||| |||||    ||||||||||||| |||||||||||    
T  40862766 gactgaaagatcacaacctataaaacaataaaatgtaaagtaaaatatgaggtgtgacgtaatcactgaactaagtaattatccgca 40862852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 140 - 259
Target Start/End: Original strand, 28703675 - 28703794
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    |||||| |||||||||| ||||| |||||||||||||||||||||||||  |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  28703675 ggatgagtgaaggatcataacctgcaaaacaagaaaataaaaagtaaaatttgaggcatgattatgtcactgaactaaggaattatccgcagaattgcgc 28703774  T
Q  240 aactatcccagagtacaaca 259  Q
    ||||  |||| |||||||||    
T  28703775 aactcccccaaagtacaaca 28703794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 32893778 - 32893713
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatg 205  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||    
T  32893778 ggatgactgaaggatcataacctgcaaaacaagaaaataacaagtaaaacctgaggcgtgactatg 32893713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 36611959 - 36612062
Alignment:
Q  141 gatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgacta-tgtcactgaactaaggaattatccgcagaattgcgc 239  Q
    |||||||||||||||||||||| |||||||| ||||| ||| |||||| || |||||||||||  ||||||| |||||| |||||| | |||||||||||    
T  36611959 gatgactgaaggatcacaacctgcaaaacaataaaatgaaacgtaaaatctaaggcgtgactaccgtcactggactaagaaattattcacagaattgcgc 36612058  T
Q  240 aact 243  Q
    ||||    
T  36612059 aact 36612062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 8878851 - 8878926
Alignment:
Q  186 aaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactatcccagagtacaacagg 261  Q
    |||||||||||||||||| |||||||||||||  ||||||| |||  ||||||||| |  |||||| |||||||||    
T  8878851 aaacctgaggcgtgactacgtcactgaactaaacaattatcagcaagattgcgcaattcccccagaatacaacagg 8878926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 32893791 - 32893838
Alignment:
Q  214 ctaaggaattatccgcagaattgcgcaactatcccagagtacaacagg 261  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||    
T  32893791 ctaagaaattatccgcagaattgcgcaactcccccagagtacaacagg 32893838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 47323399 - 47323278
Alignment:
Q  135 ttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaat 234  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||| |||    
T  47323399 ttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaagtaaaacct---gcgtgactatgtcaccgaactaaggaattatccgcaaaat 47323303  T
Q  235 tgcgcaactatcccagagtacaaca 259  Q
    ||||||| |  || |||||||||||    
T  47323302 tgcgcaattccccaagagtacaaca 47323278  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 47326976 - 47326868
Alignment:
Q  135 ttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaat 234  Q
    |||| ||||||| ||||||||||||||| |||||||||||| |||| |||||||  ||||||||||||||||||| ||||||||||| ||||||||||||    
T  47326976 ttcgcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagagtaaaatttgaggcgtgactatgtcacagaactaaggaaatatccgcagaat 47326877  T
Q  235 tgcgcaact 243  Q
    |||||||||    
T  47326876 tgcgcaact 47326868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 135 - 261
Target Start/End: Original strand, 13016347 - 13016473
Alignment:
Q  135 ttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaat 234  Q
    |||| |||||||| |||||||| ||||| |||||  ||||||||||| |||||| |||||||||||| |||||||||||||||||||||||| |||||||    
T  13016347 ttcgcggatgactaaaggatcataacctgcaaaaacagaaaataaaacgtaaaatctgaggcgtgacaatgtcactgaactaaggaattatctgcagaat 13016446  T
Q  235 tgcgcaactatcccagagtacaacagg 261  Q
    |||| ||||  |||| |||||||||||    
T  13016447 tgcgtaacttccccatagtacaacagg 13016473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 291406 - 291365
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaa 181  Q
    ||||||||||||||||||||||| |||||| | |||||||||    
T  291406 ggatgactgaaggatcacaacctgcaaaacgataaaataaaa 291365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 27075105 - 27074982
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaag-taaaacc-tgaggcgtgactatgtcactgaactaaggaattatccgcagaattgc 237  Q
    |||||||||||| |||||||||| |||||||| ||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27075105 ggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaattgc 27075006  T
Q  238 gcaactatcccagagtacaacagg 261  Q
    ||||||  |||||| |||||||||    
T  27075005 gcaactcccccagaatacaacagg 27074982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 260
Target Start/End: Complemental strand, 27078468 - 27078346
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaag-taaaacc-tgaggcgtgactatgtcactgaactaaggaattatccgcagaattgc 237  Q
    |||||||||||| |||||||||| |||||||  ||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  27078468 ggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaattgc 27078369  T
Q  238 gcaactatcccagagtacaacag 260  Q
    ||||||  |||||| ||||||||    
T  27078368 gcaactcccccagaatacaacag 27078346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 40254992 - 40254869
Alignment:
Q  135 ttcgtggatgactgaaggatcacaacctacaaaacaagaaaataaaaagtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaat 234  Q
    |||| |||||||||||||||||||||||  |||| || ||||||||| |||||||   ||||||||||||||||||||||||||||||||||| ||||||    
T  40254992 ttcgcggatgactgaaggatcacaacctgtaaaataataaaataaaacgtaaaac---aggcgtgactatgtcactgaactaaggaattatccacagaat 40254896  T
Q  235 tgcgcaactatcccagagtacaacagg 261  Q
    |||||||||   ||| |||||||||||    
T  40254895 tgcgcaactcctccatagtacaacagg 40254869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 26050138 - 26050015
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaag-taaaacc-tgaggcgtgactatgtcactgaactaaggaattatccgcagaattgc 237  Q
    |||||||||||| |||||||||| |||||||  ||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  26050138 ggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaattgc 26050039  T
Q  238 gcaactatcccagagtacaacagg 261  Q
    ||||||  |||||| |||||||||    
T  26050038 gcaactcccccagaatacaacagg 26050015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 261
Target Start/End: Complemental strand, 26053552 - 26053429
Alignment:
Q  140 ggatgactgaaggatcacaacctacaaaacaagaaaataaaaag-taaaacc-tgaggcgtgactatgtcactgaactaaggaattatccgcagaattgc 237  Q
    |||||||||||| |||||||||| |||||||  ||| ||||||| ||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  26053552 ggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgtagaattgc 26053453  T
Q  238 gcaactatcccagagtacaacagg 261  Q
    ||||||  |||||| |||||||||    
T  26053452 gcaactcccccagaatacaacagg 26053429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 206264 - 206191
Alignment:
Q  186 aaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactatcccagagtacaaca 259  Q
    |||| ||||||||||||| |||| || ||||||||||||||| || ||| ||||||||  |||||| |||||||    
T  206264 aaacttgaggcgtgactaggtcattggactaaggaattatccacataatagcgcaactcccccagaatacaaca 206191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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