View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5644-Insertion-2 (Length: 1160)

Name: NF5644-Insertion-2
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5644-Insertion-2
NF5644-Insertion-2
[»] chr6 (17 HSPs)
chr6 (440-1111)||(2104602-2105308)
chr6 (8-297)||(2105473-2105770)
chr6 (769-909)||(2096001-2096147)
chr6 (917-1017)||(2085845-2085947)
chr6 (384-440)||(2105330-2105386)
chr6 (835-896)||(2052765-2052826)
chr6 (535-656)||(5253222-5253346)
chr6 (535-656)||(8611973-8612097)
chr6 (175-293)||(2096423-2096539)
chr6 (538-645)||(29444775-29444885)
chr6 (535-656)||(12635801-12635925)
chr6 (59-112)||(2096567-2096620)
chr6 (599-656)||(9633624-9633681)
chr6 (599-656)||(14107357-14107414)
chr6 (606-656)||(3030642-3030692)
chr6 (606-656)||(30788852-30788902)
chr6 (535-576)||(29333220-29333261)
[»] chr7 (11 HSPs)
chr7 (535-656)||(5069814-5069938)
chr7 (535-656)||(17748381-17748505)
chr7 (535-656)||(38578866-38578990)
chr7 (535-656)||(22993366-22993490)
chr7 (539-592)||(10317811-10317864)
chr7 (535-592)||(18785655-18785712)
chr7 (599-656)||(43346778-43346835)
chr7 (535-592)||(43925498-43925555)
chr7 (535-592)||(1605927-1605984)
chr7 (535-592)||(1797446-1797503)
chr7 (535-592)||(26423353-26423410)
[»] chr3 (16 HSPs)
chr3 (543-656)||(28572211-28572327)
chr3 (535-656)||(15320169-15320293)
chr3 (535-656)||(29127902-29128026)
chr3 (535-656)||(35315939-35316063)
chr3 (599-656)||(7310703-7310760)
chr3 (535-656)||(7328827-7328950)
chr3 (535-653)||(26207804-26207925)
chr3 (535-645)||(30767258-30767371)
chr3 (551-656)||(7650226-7650334)
chr3 (535-656)||(47749105-47749228)
chr3 (535-656)||(54261209-54261333)
chr3 (535-592)||(31072861-31072918)
chr3 (535-592)||(45877437-45877494)
chr3 (600-656)||(36043674-36043730)
chr3 (599-645)||(19873422-19873468)
chr3 (535-592)||(15795561-15795617)
[»] chr2 (19 HSPs)
chr2 (535-656)||(10823043-10823167)
chr2 (536-647)||(7787040-7787154)
chr2 (542-656)||(12455300-12455417)
chr2 (535-656)||(8410114-8410238)
chr2 (535-656)||(9360747-9360871)
chr2 (535-656)||(25540403-25540527)
chr2 (535-646)||(331484-331598)
chr2 (535-656)||(7747257-7747381)
chr2 (535-592)||(19976873-19976930)
chr2 (535-586)||(15079466-15079517)
chr2 (535-656)||(18902529-18902653)
chr2 (551-656)||(28616378-28616486)
chr2 (535-656)||(41031905-41032028)
chr2 (535-656)||(41220618-41220742)
chr2 (551-655)||(16636065-16636172)
chr2 (599-656)||(18649025-18649082)
chr2 (535-592)||(29653610-29653667)
chr2 (535-592)||(34356189-34356246)
chr2 (599-656)||(44945643-44945700)
[»] chr5 (16 HSPs)
chr5 (535-656)||(8513503-8513627)
chr5 (535-656)||(9812856-9812980)
chr5 (535-656)||(12704998-12705122)
chr5 (535-586)||(35813070-35813121)
chr5 (535-656)||(5731919-5732043)
chr5 (535-593)||(20692917-20692975)
chr5 (599-656)||(2485247-2485304)
chr5 (599-656)||(27648424-27648481)
chr5 (535-656)||(7866565-7866689)
chr5 (606-656)||(38296729-38296779)
chr5 (535-592)||(1898985-1899042)
chr5 (535-576)||(6767133-6767174)
chr5 (535-592)||(11845867-11845924)
chr5 (535-592)||(15034059-15034116)
chr5 (535-592)||(25417249-25417306)
chr5 (599-656)||(40773324-40773381)
[»] chr8 (14 HSPs)
chr8 (535-656)||(10927593-10927717)
chr8 (535-656)||(17981428-17981552)
chr8 (535-656)||(8141089-8141213)
chr8 (535-656)||(44893277-44893401)
chr8 (599-656)||(8803108-8803165)
chr8 (535-655)||(15884556-15884678)
chr8 (535-593)||(1013042-1013100)
chr8 (535-656)||(14666070-14666194)
chr8 (611-656)||(1653859-1653904)
chr8 (611-656)||(1742235-1742280)
chr8 (535-592)||(2467184-2467241)
chr8 (535-592)||(38922480-38922537)
chr8 (599-656)||(43027359-43027416)
chr8 (535-592)||(44031506-44031563)
[»] chr4 (17 HSPs)
chr4 (535-656)||(7246645-7246769)
chr4 (535-656)||(38166015-38166139)
chr4 (535-653)||(1940779-1940897)
chr4 (535-656)||(55921022-55921146)
chr4 (535-592)||(36145281-36145338)
chr4 (535-656)||(36262766-36262888)
chr4 (535-656)||(47078446-47078570)
chr4 (535-647)||(8889010-8889125)
chr4 (535-656)||(2559295-2559419)
chr4 (535-656)||(30317221-30317345)
chr4 (535-656)||(42722576-42722700)
chr4 (538-587)||(29588727-29588776)
chr4 (599-656)||(31588741-31588798)
chr4 (599-656)||(37369041-37369098)
chr4 (539-592)||(43468339-43468392)
chr4 (599-656)||(47682381-47682438)
chr4 (599-656)||(50485998-50486055)
[»] scaffold0006 (1 HSPs)
scaffold0006 (535-653)||(68503-68621)
[»] scaffold0002 (2 HSPs)
scaffold0002 (535-656)||(556-680)
scaffold0002 (535-592)||(319408-319465)
[»] chr1 (12 HSPs)
chr1 (535-656)||(18915851-18915975)
chr1 (537-656)||(2980931-2981053)
chr1 (535-646)||(40288487-40288601)
chr1 (538-656)||(43959821-43959942)
chr1 (535-592)||(31152700-31152757)
chr1 (596-656)||(50371834-50371894)
chr1 (597-656)||(3850742-3850801)
chr1 (535-582)||(9853354-9853401)
chr1 (535-656)||(41663856-41663980)
chr1 (538-592)||(45536695-45536749)
chr1 (599-656)||(34697386-34697443)
chr1 (535-592)||(49078098-49078155)
[»] scaffold0011 (1 HSPs)
scaffold0011 (599-656)||(224370-224427)
[»] scaffold0376 (1 HSPs)
scaffold0376 (535-656)||(12656-12780)
[»] scaffold0332 (1 HSPs)
scaffold0332 (535-577)||(15317-15359)
[»] scaffold0029 (1 HSPs)
scaffold0029 (599-656)||(41097-41154)
[»] scaffold0010 (1 HSPs)
scaffold0010 (599-656)||(155710-155767)
[»] scaffold0005 (1 HSPs)
scaffold0005 (535-592)||(271140-271197)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 440 - 1111
Target Start/End: Complemental strand, 2105308 - 2104602
Alignment:
Q  440 tcaaattagttgagctattcaatgtgttcaaataaacaagtaattatcattaccatatgttaagtggtaaaccaagttatttgggcttggcaaggaagga 539  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  2105308 tcaaattagttgagctattcaatgtgttcaaataaacaagtaattatcattaccatatgttaagtggtaaaccaagttgtttggacttggcaaggaagga 2105209  T
Q  540 cgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatggcttctacgtacgagtcggattagtcgcccattttttgtgggtc 639  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||| || ||||| ||||||    
T  2105208 cgtacccgggaaataccgggttcgatttctaggggaaacaacgcttggccagtatggcctctacgtacaagtcggattagtcgctcactttttatgggtc 2105109  T
Q  640 ggaaaccgatgcgaaagnnnnnnnntgctaaaaacgtatcatcaagtattgtcatagtcacattgttccgtaaaaaatagcagaagaatatataaagaag 739  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105108 ggaaaccgatgcgaaagaaaaaaa-tgctaaaaacgtatcatcaagtattgtcatagtcacattgttccgtaaaaaatagcagaagaatatataaagaag 2105010  T
Q  740 aa---aatttacctctctttttccactgctcgtgatttctc---------------aactccaattccagctctaatgtgtttgttagagtccacagtac 821  Q
    ||   ||||||||||||||||||||||||||||||||||||               |||||||||||||| |||||||||||||||||||||||||||||    
T  2105009 aagaaaatttacctctctttttccactgctcgtgatttctctctctatgatttttcaactccaattccaggtctaatgtgtttgttagagtccacagtac 2104910  T
Q  822 tatactatatagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttacgacaacaactat 921  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2104909 tatactatatagtaaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccagaataaattctttactacaacaactat 2104810  T
Q  922 ggacagtaataaaaactaaccaaggtaaatgt-ataaagagcatggcagtaataatggctatcctatgtca-caatgtactattcattttgaaacttg-- 1017  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||      
T  2104809 ggacagtaataaaaactaaccaaggtaaatgtaataaagagcatggcagtaataatggctatcctatgtcaccaatgtactattcattttgaaacttggt 2104710  T
Q  1018 ------tgacagaa-tttgaaac-tgatgttg-tgtgt-ctatgatagactagtaacgt-gctgatgcataattttca-tcgg-ttattta--ttagatg 1102  Q
          |||||||| |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||| ||||||| |||| |||||||  |||||||    
T  2104709 gttttttgacagaattttgaaacttgatgttgttgtgtactatgatagaccagtaacgtggctgatgcat-attttcattcggtttatttaatttagatg 2104611  T
Q  1103 tttgctttt 1111  Q
    |||||||||    
T  2104610 tttgctttt 2104602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 2105770 - 2105473
Alignment:
Q  8 attgtttaactcactttacatgaagtcatcgaatgataaaccattttaccc--------caactatattctatcaatttaacataaatacaattaaacca 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  2105770 attgtttaactcactttacatgaagtcatcgaatgataaaccattttaccttcggacttcaactatattctatcaatttaacataaatacaattaaacca 2105671  T
Q  100 aaattaatttttatcacaacataatcaaacattgacaaagtatatgtgacattttgagcatgaaggatttttcatgctatgctatccaagatttttcaac 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2105670 aaattaatttttatcacaacataatcaaacattgacaaagtatatgtgacattttgagcatgaaggatttttcatgctatgctatccaagatttttcaac 2105571  T
Q  200 aatttatagaaacnnnnnnntataaaatagaccgacttactggattacaattcctctctaagattgcaataccacaaccatgcatctggacaagtaag 297  Q
    |||||||||||||       ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  2105570 aatttatagaaacaaaaaaatataaaataaaccgacttactggattataattcctctctacgattgcaataccacaaccatgcatctggaaaagtaag 2105473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 769 - 909
Target Start/End: Complemental strand, 2096147 - 2096001
Alignment:
Q  769 tgatttctcaactccaattccagctctaatgtgtttgttagagtccacagtacta----tactata--tagtaaaattgatcggtttgttataacaaatt 862  Q
    |||||| |||||||||| || ||||||||||||||||||||||||| ||||| ||    || ||||  |||||||| |||||||||||||||||||||||    
T  2096147 tgatttttcaactccaagtctagctctaatgtgtttgttagagtccgcagtagtagtagtagtataaatagtaaaactgatcggtttgttataacaaatt 2096048  T
Q  863 ctgaaaccggatttcaaattttttattaaccagaataaattctttac 909  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2096047 ctgaaaccggatttcaaattttttattaaccagagtaaattctttac 2096001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 917 - 1017
Target Start/End: Complemental strand, 2085947 - 2085845
Alignment:
Q  917 actatggacagtaataaaaactaaccaaggtaaatgt-ataaagagcatggcagtaataatggctatcctatgtca-caatgtactattcattttgaaac 1014  Q
    ||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||    
T  2085947 actatggacagtaataaaaaccaaccatggtaaatgtaataatgagcatggcagaaataatagcaatcctatgtcaccaatgtactattcattttgaaac 2085848  T
Q  1015 ttg 1017  Q
    |||    
T  2085847 ttg 2085845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 2105386 - 2105330
Alignment:
Q  384 aatgacaaatattattagctagtttttgaattaattttttctctttcatcgaggttt 440  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  2105386 aatgacaaatattattagctagtttttgaattaattttttttctttcatctaggttt 2105330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 835 - 896
Target Start/End: Complemental strand, 2052826 - 2052765
Alignment:
Q  835 aaaattgatcggtttgttataacaaattctgaaaccggatttcaaattttttattaaccaga 896  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  2052826 aaaactgatcggtttgttataacaaattctgaaaccggatttcaaataatttatgaaccaga 2052765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 5253346 - 5253222
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||| ||||| ||||  |   || |||||| | ||| ||||||| |||||||  |||    
T  5253346 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagccggattaatcgcccaccttt 5253247  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  5253246 ggtgggtcggaaaccggtgcgaaag 5253222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 8612097 - 8611973
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||| | || ||||||||  |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  8612097 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 8611998  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||| ||||||||    
T  8611997 ggtgggtcagaaaccggtgcgaaag 8611973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 293
Target Start/End: Complemental strand, 2096539 - 2096423
Alignment:
Q  175 gctatgctatccaagatttttcaacaatttatagaaacnnnnnnn-tataaaatagaccgacttactggattacaattcctctctaagattgcaatacca 273  Q
    |||||| |||||||||||||||||||||||||| ||||        |||| || | ||| |||||||||||||   ||||||| |  |||||||||||||    
T  2096539 gctatgttatccaagatttttcaacaatttatacaaacacaaaacatatagaacaaaccaacttactggatta---ttcctctgtgcgattgcaatacca 2096443  T
Q  274 caaccatgcatctggacaag 293  Q
    |||| |||||||||||||||    
T  2096442 caacgatgcatctggacaag 2096423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 538 - 645
Target Start/End: Complemental strand, 29444885 - 29444775
Alignment:
Q  538 gacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgt 634  Q
    ||||||||||||  ||||||||||||||||||||||| || ||||||||| ||||  |   || |||||| | ||| ||||||||| | |||| ||| ||    
T  29444885 gacgtacccgggggataccgggttcgatttctagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagttgtccatctttggt 29444786  T
Q  635 gggtcggaaac 645  Q
    |||||||||||    
T  29444785 gggtcggaaac 29444775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 12635801 - 12635925
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| ||||| |||||| |||| |||| | |||||||| |||||||||  |||  |   || |||||| || || ||||||||||||||| | ||    
T  12635801 aaggacgtatccggggaataccaggtttgattcccaggggaaacaacgcttggctagtgcgcatgcctctacgcacaagccggattagtcgcccactatt 12635900  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  12635901 ggtgggtcggaaaccggtgcgaaag 12635925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 2096620 - 2096567
Alignment:
Q  59 caactatattctatcaatttaacataaatacaattaaaccaaaattaattttta 112  Q
    |||||| ||||||||||||| | ||||||||||||||| |||||||| ||||||    
T  2096620 caactacattctatcaattttatataaatacaattaaatcaaaattagttttta 2096567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 9633681 - 9633624
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  9633681 tctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 9633624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 14107414 - 14107357
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| | ||| ||||||||||||||||| || ||||||||||||||| ||||||||    
T  14107414 tctacgcatgagccggattagtcgcccattattagtgggtcggaaaccggtgcgaaag 14107357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 606 - 656
Target Start/End: Complemental strand, 3030692 - 3030642
Alignment:
Q  606 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||| |||||    
T  3030692 acgagtcggattagtcgctcacatttggtgggtcggaaaccgatgtgaaag 3030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 606 - 656
Target Start/End: Complemental strand, 30788902 - 30788852
Alignment:
Q  606 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  30788902 acgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 30788852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 576
Target Start/End: Complemental strand, 29333261 - 29333220
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaa 576  Q
    |||||||||||| || |||||||||||||||||| |||||||    
T  29333261 aaggacgtacccagggaataccgggttcgatttccaggggaa 29333220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 5069938 - 5069814
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||||||||||||||||||||||||||| ||| | || ||||||| |  ||| ||   || |||||| || || |||||||||||||||  |||    
T  5069938 aaggacgtacccgggaaataccgggttcgatttccaggaggaacaacgcttagctagtgtgcatgcctctacgcacaagccggattagtcgcccaccttt 5069839  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||||||||||||    
T  5069838 ggtgggtcggaaaccgatgcgaaag 5069814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 17748505 - 17748381
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||  |||| |||||||||||||||| | ||||| || ||||||||| ||||  |   || |||||||||||| ||||||||||| |||  |||    
T  17748505 aaggacgtattcggggaataccgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgtacgagccggattagtcgtccaccttt 17748406  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
      |||||||||||||||||||||||    
T  17748405 gttgggtcggaaaccgatgcgaaag 17748381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 38578990 - 38578866
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||| ||||||||||| | ||||| || ||||||||| ||||  |   || |||||| | ||| |||||||||||||||  |||    
T  38578990 aaggacgtacccggggaatatcgggttcgattcccagggggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 38578891  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  38578890 ggtgggtcggaaaccggtgcgaaag 38578866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 22993490 - 22993366
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||| ||||||||||| | ||| | || ||||||||| |||| ||   || |||||| ||||  |||||||||||| ||  |||    
T  22993490 aaggacgtacccggggaatatcgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgctcaccttt 22993391  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||| ||||||||    
T  22993390 ggtgggtcagaaaccggtgcgaaag 22993366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 539 - 592
Target Start/End: Complemental strand, 10317864 - 10317811
Alignment:
Q  539 acgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||| |||||||||||||||| | ||||| |||||| ||||||||||    
T  10317864 acgtacccggggaataccgggttcgattcccagggggaataacacttggtcagt 10317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 18785655 - 18785712
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||| |||||||||||||||| ||||||| || ||| ||||| ||||    
T  18785655 aaggacgtacccggggaataccgggttcgattcctagggggaacaacacttggccagt 18785712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 43346835 - 43346778
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||| |||||||||||| ||| ||| ||||||||||||||  ||||||||    
T  43346835 tctacgtacgagccggattagtcgctcatctttggtgggtcggaaaccagtgcgaaag 43346778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 43925498 - 43925555
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||| ||||||||||    
T  43925498 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggtcagt 43925555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 1605927 - 1605984
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||  |||||| ||||||||||| ||||| || ||||||||| ||||    
T  1605927 aaggacgtacccggagaatacctggttcgatttccagggggaacaacgcttggccagt 1605984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 1797446 - 1797503
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||| | |||||||||||||||| | |||||||| ||||||||| ||||    
T  1797446 aaggacgtatccgaggaataccgggttcgattcccaggggaaacaacgcttggccagt 1797503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 26423410 - 26423353
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||  | |||||||||||||||| | |||||||| ||||||||| ||||    
T  26423410 aaggacgtacccaaggaataccgggttcgattcccaggggaaacaacgcttggccagt 26423353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 543 - 656
Target Start/End: Complemental strand, 28572327 - 28572211
Alignment:
Q  543 acccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtc 639  Q
    ||||||| ||||| |||||||||| | |||||||| ||||||||| |||||||   || |||||| ||||| |||||||||||||||  ||| |||||||    
T  28572327 acccggggaatactgggttcgattcccaggggaaacaacgcttggccagtatgcatgcctctacgcacgagccggattagtcgcccacctttggtgggtc 28572228  T
Q  640 ggaaaccgatgcgaaag 656  Q
    |||||||| ||||||||    
T  28572227 ggaaaccggtgcgaaag 28572211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 15320169 - 15320293
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||||| ||| | || || | |||| |||| ||   || |||||| ||||| |||||||||||||||  |||    
T  15320169 aaggacgtacccggggaataccgggttcgatttcgaggaggaacaatgattggccagtgtgcatgcctctacgcacgagccggattagtcgcccaccttt 15320268  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||| ||||||||    
T  15320269 ggtgggtcagaaaccggtgcgaaag 15320293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 29127902 - 29128026
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| | ||| |||| ||||||||||||| ||||  || ||| ||||||||||  |   || |||||| | ||| |||||||||||||||  |||    
T  29127902 aaggacgtatctggggaatatcgggttcgatttccagggagaacaacacttggtcagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 29128001  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||||||||||||    
T  29128002 ggtgggtcggaaaccgatgcgaaag 29128026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 35315939 - 35316063
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||  |||| ||||||||||| | ||||| || ||| ||||| ||||  |   || |||||| | |||  |||||||||||||| ||||    
T  35315939 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcatgagctggattagtcgcccactttt 35316038  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||||||||||||    
T  35316039 ggtgggtcggaaaccgatgcgaaag 35316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 7310760 - 7310703
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||| ||| ||| ||||||||||||||||||||||||    
T  7310760 tctacgcacgagccggattagtcgctcatctttggtgggtcggaaaccgatgcgaaag 7310703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 7328827 - 7328950
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    |||||||||||||||||||||||||||||||| | ||||| || ||| ||||| ||||    ||| ||  |||| | ||| |||||||||||||||  ||    
T  7328827 aaggacgtacccgggaaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcct--tacgcatgagccggattagtcgcccacctt 7328924  T
Q  631 ttgtgggtcggaaaccgatgcgaaag 656  Q
    | |||||||| |||||| ||||||||    
T  7328925 tggtgggtcgaaaaccggtgcgaaag 7328950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 653
Target Start/End: Complemental strand, 26207925 - 26207804
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||| ||||||||| |||||||||||||||| | | ||| || ||||||||  |||| ||   || |||||| | ||| ||||||||||| ||||| ||    
T  26207925 aaggatgtacccggggaataccgggttcgattcccacggggaacaacgcttgtccagtgtgcatgcctctacgcatgagccggattagtcggccattatt 26207826  T
Q  632 tgtgggtcggaaaccgatgcga 653  Q
     ||||||||||||||| |||||    
T  26207825 agtgggtcggaaaccggtgcga 26207804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 645
Target Start/End: Complemental strand, 30767371 - 30767258
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||| ||||| ||| |||| ||||||||||||| ||||| || ||| ||||| |||| ||   || |||||| ||||| |||||||||||||||  |||    
T  30767371 aaggatgtacctggggaatatcgggttcgatttccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgcccaccttt 30767272  T
Q  632 tgtgggtcggaaac 645  Q
     |||||||||||||    
T  30767271 ggtgggtcggaaac 30767258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 551 - 656
Target Start/End: Original strand, 7650226 - 7650334
Alignment:
Q  551 aataccgggttcgatttctaggggaaataacgcttggtcagtatggct---tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 647  Q
    |||||||||||||||||| ||||| || ||| ||||| ||||| |  |   |||||| ||||| |||||||||||||||  ||| |||||| ||||||||    
T  7650226 aataccgggttcgatttccagggggaacaacacttggccagtacgaatgtctctacgcacgagccggattagtcgcccacctttggtgggttggaaaccg 7650325  T
Q  648 atgcgaaag 656  Q
     ||||||||    
T  7650326 gtgcgaaag 7650334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 47749228 - 47749105
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| || || |||||||||||||||| |||||||||  ||| ||||| ||||  |   || |||||| ||||| || ||||||||||||  |||    
T  47749228 aaggacgtatccagggaataccgggttcgattcctaggggaac-aactcttggccagtgcgcatgcctctacgcacgagccgaattagtcgcccaccttt 47749130  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     || |||||||||||||||||||||    
T  47749129 ggtaggtcggaaaccgatgcgaaag 47749105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 54261209 - 54261333
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||| ||| |||||||||||||||| ||||| | || ||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  54261209 aaggacgtacctggggaataccgggttcgattcctaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 54261308  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  54261309 agtgggtcggaaaccggtgcgaaag 54261333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 31072861 - 31072918
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||  |||||| ||||||||||| ||||| || ||||||||||||||    
T  31072861 aaggacgtacccggagaataccaggttcgatttccagggggaacaacgcttggtcagt 31072918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 45877437 - 45877494
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||||| |||||||||||||||||| |||||||| ||| ||||| ||||    
T  45877437 aaggacgtatccggggaataccgggttcgatttccaggggaaacaacacttggccagt 45877494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 600 - 656
Target Start/End: Complemental strand, 36043730 - 36043674
Alignment:
Q  600 ctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    ||||| ||||| |||||||||||||||  ||| ||||||||||||||| ||||||||    
T  36043730 ctacgcacgagccggattagtcgcccacctttggtgggtcggaaaccggtgcgaaag 36043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 599 - 645
Target Start/End: Original strand, 19873422 - 19873468
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaac 645  Q
    |||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  19873422 tctacgcacgagccggattagtcgtccatcttttgtgggtcggaaac 19873468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 15795617 - 15795561
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||| ||||||| |||||||| | ||||| || ||||||||||||||    
T  15795617 aaggacgtacccggggaataccgagttcgattcccagggg-aacaacgcttggtcagt 15795561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 10823043 - 10823167
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| ||||||||||| |||| | ||| | || ||||||||| ||||  |   || |||||| ||||| |||||||||||||||  |||    
T  10823043 aaggacgtacccggggaataccgggtttgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccaccttt 10823142  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||||||| ||||||||    
T  10823143 tgtgggtcggaaaccggtgcgaaag 10823167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 536 - 647
Target Start/End: Original strand, 7787040 - 7787154
Alignment:
Q  536 aggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccatttttt 632  Q
    |||||||||||||| |||||||||||||||||| ||||| || ||  ||||| ||||| |   || |||||| ||||| |||||||||||||||| |||     
T  7787040 aggacgtacccggggaataccgggttcgatttccagggggaacaatacttggccagtacgcatgcctctacgcacgagccggattagtcgcccatctttg 7787139  T
Q  633 gtgggtcggaaaccg 647  Q
    |||| ||| ||||||    
T  7787140 gtggatcgaaaaccg 7787154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 542 - 656
Target Start/End: Original strand, 12455300 - 12455417
Alignment:
Q  542 tacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggt 638  Q
    |||||||| |||||||||||||||||| |||||||| ||||||| | ||||  |   || |||||| ||||| |||||||||||| ||   || ||||||    
T  12455300 tacccggggaataccgggttcgatttccaggggaaacaacgcttagccagtgcgcatgcctctacgcacgagccggattagtcgctcaccattggtgggt 12455399  T
Q  639 cggaaaccgatgcgaaag 656  Q
    ||||||||| ||||||||    
T  12455400 cggaaaccggtgcgaaag 12455417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 8410114 - 8410238
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||  |||| ||||||||||| | ||||| || ||| ||||| ||||  |   || |||||| ||||| ||||||||||||||| ||||    
T  8410114 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacacttggccagtgcgcatgcctctacgcacgagccggattagtcgcccactttt 8410213  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     | ||||||||||||| ||||||||    
T  8410214 ggggggtcggaaaccggtgcgaaag 8410238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 9360871 - 9360747
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||| ||||||||| |||| ||||| |||| |||| ||||  |   || |||||| ||||| || ||||||||||||  |||    
T  9360871 aaggacgtacccggggaataccaggttcgattactagaggaaacaacgtttggccagtgcgcatgcctctacgcacgagccgaattagtcgcccaccttt 9360772  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||| ||||||||| ||||||||    
T  9360771 agtgggccggaaaccggtgcgaaag 9360747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 25540527 - 25540403
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| | ||| ||||| |||||||||| ||||||| || ||||||||| ||||  |   || |||||| ||||| ||||||||||| |||  |||    
T  25540527 aaggacgtatctggggaatactgggttcgattcctagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgtccaccttt 25540428  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  25540427 ggtgggtcggaaaccggtgcgaaag 25540403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 535 - 646
Target Start/End: Original strand, 331484 - 331598
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||| ||||| ||||  |   ||||||||| | ||| |||||||||||||||  |||    
T  331484 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgcgcatgcttctacgcatgagccggattagtcgcccaccttt 331583  T
Q  632 tgtgggtcggaaacc 646  Q
     |||||| |||||||    
T  331584 ggtgggttggaaacc 331598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 7747257 - 7747381
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| ||||| |||||||||||||||| ||||| | || |||| |||| |||| ||   || |||||| | ||| |||||||||||  ||  |||    
T  7747257 aaggacgtatccggggaataccgggttcgattcctaggaggaacaacgtttggccagtgtgcatgcctctacgcatgagccggattagtcgttcaccttt 7747356  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  7747357 agtgggtcggaaaccggtgcgaaag 7747381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 19976930 - 19976873
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||||| |||||||||||||||||  ||||| ||||||| |||||||||    
T  19976930 aaggacgtatccggggaataccgggttcgattttcagggggaataacgtttggtcagt 19976873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 15079466 - 15079517
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttg 586  Q
    ||||||||||||||| ||||| |||||||||||| ||||| || ||||||||    
T  15079466 aaggacgtacccggggaatacagggttcgatttccagggggaacaacgcttg 15079517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 18902653 - 18902529
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatggct---tctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||| |||| |||||||||||||||| | | ||| || ||||||||  ||||  |  |   |||||| ||||| | |||||||||||||  |||    
T  18902653 aaggacgtactcggggaataccgggttcgattcccacggggaacaacgcttgaccagtgcgcgtgtctctacgcacgagccagattagtcgcccaccttt 18902554  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  18902553 ggtgggtcggaaaccggtgcgaaag 18902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 551 - 656
Target Start/End: Complemental strand, 28616486 - 28616378
Alignment:
Q  551 aataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 647  Q
    |||| ||||||||||||  ||||| |||||| ||||| ||||  |   || |||||| ||||| | |||||||||||||| ||| ||||||| |||||||    
T  28616486 aatatcgggttcgattttcagggggaataacacttgggcagtgcgcatgcctctacgcacgagccagattagtcgcccatctttagtgggtcagaaaccg 28616387  T
Q  648 atgcgaaag 656  Q
     ||||||||    
T  28616386 gtgcgaaag 28616378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 41032028 - 41031905
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||| |||||  ||||||||||||| | ||||| || ||| ||||| |||| ||   || |||||| ||||| |||||||||| ||||  |||    
T  41032028 aaggacgtaccagggaac-accgggttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcacccaccttt 41031930  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||  ||||||||    
T  41031929 ggtgggtcggaaaccagtgcgaaag 41031905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 41220618 - 41220742
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||| | || ||||||||| ||||  |   || |||||| | ||| || ||||||||  ||  |||    
T  41220618 aaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccgaattagtcgttcaccttt 41220717  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  41220718 agtgggtcggaaaccggtgcgaaag 41220742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 551 - 655
Target Start/End: Complemental strand, 16636172 - 16636065
Alignment:
Q  551 aataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccg 647  Q
    |||| |||||||||||| ||| ||||| ||| |||| ||||| ||   ||||||||| |||||  |||||||||   ||||||| |||| | ||||||||    
T  16636172 aatatcgggttcgatttttagaggaaacaacacttgatcagtgtgcatgcttctacgcacgagatggattagtcattcatttttggtggattggaaaccg 16636073  T
Q  648 atgcgaaa 655  Q
    ||||||||    
T  16636072 atgcgaaa 16636065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 18649082 - 18649025
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| | |||||||||||||||| || |||| |||||| |||||||| ||||||||    
T  18649082 tctacgcatgagtcggattagtcgctcacttttggtgggttggaaaccgttgcgaaag 18649025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 29653610 - 29653667
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    |||||||||| | ||||||||||| ||||||||| |||| ||| ||||||||| ||||    
T  29653610 aaggacgtactccggaaataccggattcgatttccagggaaaacaacgcttgggcagt 29653667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 34356189 - 34356246
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| | ||| |||||||||||||||||| ||||| || ||| ||||||||||    
T  34356189 aaggacgtatctggggaataccgggttcgatttccagggggaacaacacttggtcagt 34356246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 44945643 - 44945700
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||||||  ||| |||| |||||||||| ||||||||    
T  44945643 tctacgcacgagccggattagtcgcccacctttagtggatcggaaaccggtgcgaaag 44945700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 5e-16; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 8513503 - 8513627
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    ||||||||||||||| |||||||||||||||| |||||||||| || |||||| ||||    || || |||||| ||||| | ||||||||| |||  ||    
T  8513503 aaggacgtacccggggaataccgggttcgattcctaggggaaacaatgcttggccagtgcacat-gcctctacgcacgagccagattagtcgtccacctt 8513601  T
Q  631 ttgtgggtcggaaaccgatgcgaaag 656  Q
    | ||||||||||||||| ||||||||    
T  8513602 tggtgggtcggaaaccggtgcgaaag 8513627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 9812856 - 9812980
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||| | || ||||||||| |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  9812856 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 9812955  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||| ||||||||    
T  9812956 ggtgggtcagaaaccggtgcgaaag 9812980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 12704998 - 12705122
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||| | || ||||||||  |||| ||   ||||||||| | ||  |||||||||||||||  |||    
T  12704998 aaggacgtacccggggaataccgggttcgattccgaggaggaacaacgcttgaccagtgtgcatgcttctacgcatgaaccggattagtcgcccaccttt 12705097  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||| ||||||||    
T  12705098 ggtgggtcagaaaccggtgcgaaag 12705122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 586
Target Start/End: Complemental strand, 35813121 - 35813070
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttg 586  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||| |||||    
T  35813121 aaggacgtacccgaggaataccgggttcgattcctaggggaaataatgcttg 35813070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 5732043 - 5731919
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||| | || ||||||||| ||||  |   || |||||||| ||| | |||||||||  ||  |||    
T  5732043 aaggacgtacccggggaataccgggttcgattcccaggaggaacaacgcttggccagtgcgcatgcctctacgtatgagccagattagtcgttcaccttt 5731944  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  5731943 agtgggtcggaaaccggtgcgaaag 5731919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 593
Target Start/End: Original strand, 20692917 - 20692975
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagta 593  Q
    ||||||||||||||| ||||||||||| |||| |||| ||||| ||||||||| |||||    
T  20692917 aaggacgtacccggggaataccgggtttgattcctagaggaaacaacgcttggccagta 20692975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 2485247 - 2485304
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||| |||||||||||||||| ||  |||  |||||||||||||||||||||||    
T  2485247 tctacgtatgagtcggattagtcgctcacctttgatgggtcggaaaccgatgcgaaag 2485304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 27648481 - 27648424
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||| ||| ||||||||||| |||| ||| |||| |||||||||||||||||||    
T  27648481 tctacgtatgagccggattagtcgtccatctttggtggatcggaaaccgatgcgaaag 27648424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 7866565 - 7866689
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||| | |||||||||||||||| | ||| | || ||||||||| |||| ||   || |||||| ||||  |||||||||||||||  |||    
T  7866565 aaggacgtacccgaggaataccgggttcgattccgaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgcccaccttt 7866664  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||  ||||||  ||||||||    
T  7866665 ggtgggttagaaaccagtgcgaaag 7866689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 606 - 656
Target Start/End: Complemental strand, 38296779 - 38296729
Alignment:
Q  606 acgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||||||||||||  |||  |||||||||||||||||| ||||    
T  38296779 acgagtcggattagtcgcccacctttgatgggtcggaaaccgatgcaaaag 38296729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 1898985 - 1899042
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||| ||||||||| |||||||||||||||| | ||||| || ||||||||| ||||    
T  1898985 aaggatgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagt 1899042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 576
Target Start/End: Complemental strand, 6767174 - 6767133
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaa 576  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  6767174 aaggacgtacccggggaataccgggttcgattcataggggaa 6767133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 11845924 - 11845867
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||| |||||| ||||||||||||| ||||| || |||| |||| ||||    
T  11845924 aaggacgtacccgagaaatatcgggttcgatttcgagggggaacaacgtttggccagt 11845867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 15034059 - 15034116
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||| ||||||||| |||||||||||| ||||| | |||||| ||| ||||||||||    
T  15034059 aaggatgtacccggggaataccgggttcaatttccatgggaaacaacacttggtcagt 15034116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 25417306 - 25417249
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    |||||||||| |||| |||||||||||||||| | ||||| || ||||||||| ||||    
T  25417306 aaggacgtactcggggaataccgggttcgattcccagggggaacaacgcttggccagt 25417249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 40773324 - 40773381
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    ||||| ||||||||||||||||||  ||| ||| ||| ||||||||||| ||||||||    
T  40773324 tctacatacgagtcggattagtcgttcatctttggtgcgtcggaaaccggtgcgaaag 40773381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 10927593 - 10927717
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| ||||| | || ||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  10927593 aaggacgtacccggggaataccgggttcgattcctaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 10927692  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||||||||||||    
T  10927693 agtgggtcggaaaccgatgcgaaag 10927717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 17981428 - 17981552
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||| |||||||||||||||||||||||||| | ||||| || ||| ||||  |||| ||   || |||||| |||||||| |||||| |||||  |||    
T  17981428 aaggatgtacccgggaaataccgggttcgattcccagggggaacaactcttgaccagtgtgcatgcctctacgcacgagtcgaattagttgcccagcttt 17981527  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||| ||||||||||| ||||||||    
T  17981528 ggtgagtcggaaaccggtgcgaaag 17981552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 8141089 - 8141213
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||  |||| |||||||||||||||||| |||||||| ||||||||| ||||  |   || |||||| | |||  | |||||||| |||  |||    
T  8141089 aaggacgtattcggggaataccgggttcgatttccaggggaaacaacgcttggccagtgcgcatgcctctacgcatgagctgaattagtcgtccacattt 8141188  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||| ||||||||||||||||    
T  8141189 ggtgggtcagaaaccgatgcgaaag 8141213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 44893401 - 44893277
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||| ||||||||||| || || |||||| |||| ||   || |||||| ||||| ||||||| |||| ||   ||    
T  44893401 aaggacgtacccggggaataccgggttcaatttctagggggaacaatgcttggccagtgtgcatgcctctacgcacgagccggattaatcgctcaccctt 44893302  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
      |||||||||||||| ||| ||||    
T  44893301 gatgggtcggaaaccggtgcaaaag 44893277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 8803108 - 8803165
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| ||||||||||||||||   | ||||||||||||||||||||||||    
T  8803108 tctacgcacgagccggattagtcgcccatcaatggtgggtcggaaaccgatgcgaaag 8803165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 655
Target Start/End: Complemental strand, 15884678 - 15884556
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||| ||| |||||||||||||||| | |||||||  ||| |||||  |||  |   || |||||| ||||| |||||||||||||||  |||    
T  15884678 aaggacgtacctggggaataccgggttcgattcccaggggaac-aacacttggcaagtgcgcatgcctctacgcacgagccggattagtcgcccaccttt 15884580  T
Q  632 tgtgggtcggaaaccgatgcgaaa 655  Q
     ||||||||||||||| |||||||    
T  15884579 ggtgggtcggaaaccggtgcgaaa 15884556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 593
Target Start/End: Complemental strand, 1013100 - 1013042
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagta 593  Q
    ||||||||| ||||| |||||||||||||||| | ||||| || ||||||||| |||||    
T  1013100 aaggacgtatccggggaataccgggttcgattcccagggggaacaacgcttggccagta 1013042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 14666194 - 14666070
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| ||||| |||||||||||||||| | |||||||| ||| ||||| ||||  |   || |||||| || || | |||||||||||||   ||    
T  14666194 aaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttggccagtgcgcatgcctctacgcacaagccagattagtcgcccacagtt 14666095  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     |||||||| |||||| ||||||||    
T  14666094 ggtgggtcgaaaaccggtgcgaaag 14666070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 656
Target Start/End: Complemental strand, 1653904 - 1653859
Alignment:
Q  611 tcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||||    
T  1653904 tcggattagtcgtccattattggtgggtcggaaaccggtgcgaaag 1653859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 611 - 656
Target Start/End: Complemental strand, 1742280 - 1742235
Alignment:
Q  611 tcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||||||| ||||| || ||||||||||||||| ||||||||    
T  1742280 tcggattagtcgtccattattggtgggtcggaaaccggtgcgaaag 1742235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 2467241 - 2467184
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||||| |||||||||||||||||| ||||| || ||| ||||| ||||    
T  2467241 aaggacgtatccggggaataccgggttcgatttccagggggaacaactcttggccagt 2467184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 38922537 - 38922480
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||| |||||||||||||||| | || || || ||||||||| ||||    
T  38922537 aaggacgtacccggggaataccgggttcgattcccagagggaacaacgcttggccagt 38922480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 43027359 - 43027416
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| | ||| ||||||||||| |||| |||  |||||||||||||||||||||||    
T  43027359 tctacgcatgagccggattagtcgtccatctttgatgggtcggaaaccgatgcgaaag 43027416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 44031563 - 44031506
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||| ||| |||||||||| ||||||||||||| ||||| || ||||||||| ||||    
T  44031563 aaggatgtaaccgggaaatatcgggttcgatttccagggggaacaacgcttggccagt 44031506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 7246769 - 7246645
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| ||||| |||||||||| |||| || || ||||||||| ||||  |   || |||||| | ||| |||||||||||||||  |||    
T  7246769 aaggacgtacccggggaatactgggttcgattcctagtgggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgcccaccttt 7246670  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  7246669 ggtgggtcggaaaccggtgcgaaag 7246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 38166015 - 38166139
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    ||||||||| ||||| ||||| ||||| |||| | ||||| || ||||||||| ||||    |||||| ||||| ||||| |||||||||||||||  ||    
T  38166015 aaggacgtatccggggaatactgggttggattcccagggggaacaacgcttggccagtgcgcatggct-ctacgcacgagccggattagtcgcccacctt 38166113  T
Q  631 ttgtgggtcggaaaccgatgcgaaag 656  Q
    | ||||||||||||||| ||||||||    
T  38166114 tggtgggtcggaaaccggtgcgaaag 38166139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 535 - 653
Target Start/End: Complemental strand, 1940897 - 1940779
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgctt-ggtcagtatggcttctacgtacgagtcggattagtcgcccattttttg 633  Q
    |||||||||||||||||||| ||||||||||| | ||||| || ||||||| |||  | || || |||||| ||||| |||||||||||||||  ||| |    
T  1940897 aaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgggtgcgcat-gcctctacgcacgagccggattagtcgcccacctttgg 1940799  T
Q  634 tgggtcggaaaccgatgcga 653  Q
    ||||||| |||||| |||||    
T  1940798 tgggtcgaaaaccggtgcga 1940779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 55921022 - 55921146
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||| ||||||| |||||||||||||||| | ||||| || ||| ||||||||||  |   || |||||||| ||| ||||||| |||| ||  |||    
T  55921022 aaggacgcacccggggaataccgggttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgtatgagccggattaatcgctcaccttt 55921121  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  55921122 ggtgggtcggaaaccggtgcgaaag 55921146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 36145338 - 36145281
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||| |||||||||||||||| | |||||||| |||||||| |||||    
T  36145338 aaggacgtacccggggaataccgggttcgattcccaggggaaacaacgcttgatcagt 36145281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 36262888 - 36262766
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    ||||||||||||||  |||||||||||||||| | ||||  || ||||||||| ||||    ||| || ||||| |||||||||||||||||||||  ||    
T  36262888 aaggacgtacccggagaataccgggttcgattcccaggg--aacaacgcttggccagtgcacatgcct-ctacgcacgagtcggattagtcgcccacctt 36262792  T
Q  631 ttgtgggtcggaaaccgatgcgaaag 656  Q
    | ||||||| |||||| |||||||||    
T  36262791 tggtgggtcagaaaccaatgcgaaag 36262766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 47078446 - 47078570
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||||||||| ||||    || || |||||| ||||| |||||||||||| ||   |    
T  47078446 aaggacgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagtgcacat-gcctctacgcacgagccggattagtcgctcaccat 47078544  T
Q  631 ttgtgggtcggaaaccgatgcgaaag 656  Q
    | ||||||||||||||  ||||||||    
T  47078545 tggtgggtcggaaaccagtgcgaaag 47078570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 535 - 647
Target Start/End: Original strand, 8889010 - 8889125
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt----atggcttctacgtacgagtcggattagtcgcccatttt 630  Q
    ||||||||| ||||| |||||||||||||||| ||||||| || ||| ||||| ||||    ||||| |||||| | ||| ||||||||||| |||  ||    
T  8889010 aaggacgtatccggggaataccgggttcgattcctagggggaacaacacttgggcagtgcgcatggc-tctacgcatgagccggattagtcgtccacctt 8889108  T
Q  631 ttgtgggtcggaaaccg 647  Q
    | |||||||||||||||    
T  8889109 tggtgggtcggaaaccg 8889125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 2559295 - 2559419
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||| ||| |||||||| ||||||||||||| | || ||||||||| ||||  |   || |||||| || || ||||||| ||| |||  |||    
T  2559295 aaggacgtacctggggaataccggattcgatttctaggaggaacaacgcttggccagtgcgcatgcctctacgcacaagccggattactcgtccaccttt 2559394  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  2559395 ggtgggtcggaaaccggtgcgaaag 2559419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 30317221 - 30317345
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||| |||| |||| | |||||||||   || || || ||||||||| ||||| |   || |||||| ||||| || ||||||||||||  |||    
T  30317221 aaggacgtactcggggaatatcaggttcgattctcagagggaacaacgcttggccagtacgaatgcctctacgcacgagccgaattagtcgcccaccttt 30317320  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     |||||||||||||||||| |||||    
T  30317321 ggtgggtcggaaaccgatgtgaaag 30317345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 42722700 - 42722576
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||||||||||||||||||||| ||| | ||| | || ||||||||| ||||  |   || |||||| | ||| |||||||||||  ||  |||    
T  42722700 aaggacgtacccgggaaataccgggttcaattcccaggaggaacaacgcttggccagtgcgcatgcctctacgcatgagccggattagtcgttcaccttt 42722601  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     |||||||| |||||| ||||||||    
T  42722600 agtgggtcgaaaaccggtgcgaaag 42722576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 538 - 587
Target Start/End: Original strand, 29588727 - 29588776
Alignment:
Q  538 gacgtacccgggaaataccgggttcgatttctaggggaaataacgcttgg 587  Q
    ||||| ||||||||||||||||||||||| | |||||||| || ||||||    
T  29588727 gacgtgcccgggaaataccgggttcgattcccaggggaaacaaagcttgg 29588776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 31588741 - 31588798
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| | ||| |||||||||||| || |||| |||| |||||||||||||||||||    
T  31588741 tctacgcatgagccggattagtcgctcacttttggtggatcggaaaccgatgcgaaag 31588798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 37369098 - 37369041
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||||||||| ||||||||| | || |||  |||||||||||||||||||    
T  37369098 tctacgcacgagtcggataagtcgcccactattggtgaatcggaaaccgatgcgaaag 37369041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 539 - 592
Target Start/End: Original strand, 43468339 - 43468392
Alignment:
Q  539 acgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||| |||||||||||||||| | ||||| || ||||||||| ||||    
T  43468339 acgtacccggggaataccgggttcgattcccagggggaacaacgcttggccagt 43468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 47682438 - 47682381
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| ||| |||||||||||  ||| ||||||||||||||| ||||||||    
T  47682438 tctacgcacgagccgggttagtcgcccacctttggtgggtcggaaaccggtgcgaaag 47682381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 50485998 - 50486055
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||||||   || ||||||||||||||||||| ||||    
T  50485998 tctacgcacgagccggattagtcgcccaccattagtgggtcggaaaccgatgcaaaag 50486055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 535 - 653
Target Start/End: Original strand, 68503 - 68621
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgctt-ggtcagtatggcttctacgtacgagtcggattagtcgcccattttttg 633  Q
    |||||||||||||||||||| ||||||||||| | ||||| || ||||||| |||  | || || |||||| ||||| |||||||||||||||  ||| |    
T  68503 aaggacgtacccgggaaatatcgggttcgattcccagggggaacaacgcttgggtgcgcat-gcctctacgcacgagccggattagtcgcccacctttgg 68601  T
Q  634 tgggtcggaaaccgatgcga 653  Q
    ||||||| |||||| |||||    
T  68602 tgggtcgaaaaccggtgcga 68621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 556 - 680
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| ||||||||||||||||   ||||| || ||| |||| ||||| ||   || |||||||| ||| | |||||||||| ||  |||    
T  556 aaggacgtacccggggaataccgggttcgattcgcagggggaacaacacttgatcagtgtgcatgcctctacgtatgagccagattagtcgctcaccttt 655  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  656 ggtgggtcggaaaccggtgcgaaag 680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 319408 - 319465
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||||| ||||||||||| |||||||||||| || ||||||||| ||||    
T  319408 aaggacgtatccggggaataccgggtttgatttctagggggaacaacgcttggccagt 319465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 18915851 - 18915975
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||||||||| |||||||||||||||| | ||||| || ||| ||||| |||| ||   || |||||| ||||| |||||||||||| ||   ||    
T  18915851 aaggacgtacccggggaataccgggttcgattcccagggggaacaacacttggccagtgtgcatgcctctacgcacgagccggattagtcgctcaccatt 18915950  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     |||||| |||||||| ||||||||    
T  18915951 ggtgggttggaaaccggtgcgaaag 18915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 537 - 656
Target Start/End: Complemental strand, 2981053 - 2980931
Alignment:
Q  537 ggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttg 633  Q
    ||||||| ||||| ||||| |||||||||| | || || || ||| ||||| |||| ||   || |||||| ||||||||||||||||| |||| ||| |    
T  2981053 ggacgtatccggggaatactgggttcgattcccagcgggaacaacacttggccagtgtgcatgcctctacgcacgagtcggattagtcgtccatgtttag 2980954  T
Q  634 tgggtcggaaaccgatgcgaaag 656  Q
    ||||||||||| || ||||||||    
T  2980953 tgggtcggaaatcggtgcgaaag 2980931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 535 - 646
Target Start/End: Complemental strand, 40288601 - 40288487
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||||  |||| |||||||||||||||||| ||||| || |||| |||| |||||||   || |||||  ||||| |||||||||||| |||  ||    
T  40288601 aaggacgtattcggggaataccgggttcgatttccagggggaacaacggttggccagtatgcatgcctctacacacgagccggattagtcgctcatcctt 40288502  T
Q  632 tgtgggtcggaaacc 646  Q
     ||||||||||||||    
T  40288501 ggtgggtcggaaacc 40288487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 538 - 656
Target Start/End: Complemental strand, 43959942 - 43959821
Alignment:
Q  538 gacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttttgt 634  Q
    |||||||||||| |||| ||||||| ||| | ||||| || ||||||||| ||||  |   || |||||| ||||| |||||||||||||||  ||| ||    
T  43959942 gacgtacccggggaatatcgggttcaattcccagggggaacaacgcttggccagtgcgcatgcctctacgcacgagccggattagtcgcccacctttagt 43959843  T
Q  635 gggtcggaaaccgatgcgaaag 656  Q
    || |||||||||| ||||||||    
T  43959842 ggatcggaaaccggtgcgaaag 43959821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 31152700 - 31152757
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||| |||||| || ||||||||||||||||||  |||| |||||||||||||||||    
T  31152700 aaggatgtacccagggaataccgggttcgatttcccgggggaataacgcttggtcagt 31152757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 596 - 656
Target Start/End: Complemental strand, 50371894 - 50371834
Alignment:
Q  596 gcttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    ||||||||| || || |||||||||||||||| ||| |||| |||||||||| ||||||||    
T  50371894 gcttctacgcacaagccggattagtcgcccatctttggtggatcggaaaccggtgcgaaag 50371834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 597 - 656
Target Start/End: Complemental strand, 3850801 - 3850742
Alignment:
Q  597 cttctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||||| ||||| |||||||||||||||  |||  |||||||||||||| ||||||||    
T  3850801 cttctacgcacgaggcggattagtcgcccacctttaatgggtcggaaaccggtgcgaaag 3850742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 9853401 - 9853354
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacg 582  Q
    ||||| |||||||| ||||||||||||||||| |||||||||| ||||    
T  9853401 aaggatgtacccggaaaataccgggttcgattcctaggggaaacaacg 9853354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Complemental strand, 41663980 - 41663856
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    ||||||||| ||||| |||||||||||||||| | ||||| || ||| ||||||||||  |   || |||||| | |||  |||||||||| |||   ||    
T  41663980 aaggacgtatccggggaataccgggttcgattcccagggggaacaacacttggtcagtgcgcatgcctctacgcatgagctggattagtcgtccaccatt 41663881  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
     ||||||||||||||| ||||||||    
T  41663880 ggtgggtcggaaaccggtgcgaaag 41663856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 538 - 592
Target Start/End: Original strand, 45536695 - 45536749
Alignment:
Q  538 gacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    |||||||||||  |||||||||||||||||||| ||| || ||||||||| ||||    
T  45536695 gacgtacccggagaataccgggttcgatttctaaggggaacaacgcttggccagt 45536749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 34697386 - 34697443
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| | ||| ||||||||||||||| ||||  ||||| |||||||||||||||||    
T  34697386 tctacgcatgagccggattagtcgcccacttttgatgggttggaaaccgatgcgaaag 34697443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 49078098 - 49078155
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||| ||||| |||||||||||||||| | |||||||| ||| ||||| ||||    
T  49078098 aaggacgtatccggggaataccgggttcgattcccaggggaaacaacacttggccagt 49078155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 224370 - 224427
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  224370 tctacgcacgagccggattagtcgtccatctttggtgggtcggaaaccggtgcgaaag 224427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 656
Target Start/End: Original strand, 12656 - 12780
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagtatg---gcttctacgtacgagtcggattagtcgcccattttt 631  Q
    |||||||| |||||| ||||||||||||||||   ||| | || ||||||||| |||| ||   || |||||| ||||  |||||||||||||||  |||    
T  12656 aaggacgtgcccggggaataccgggttcgattcagaggaggaacaacgcttggccagtgtgcatgcctctacgcacgaaccggattagtcgcccaccttt 12755  T
Q  632 tgtgggtcggaaaccgatgcgaaag 656  Q
      |||||| ||||||| ||||||||    
T  12756 gatgggtcagaaaccggtgcgaaag 12780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 577
Target Start/End: Original strand, 15317 - 15359
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaa 577  Q
    ||||| ||||||||| |||||||||||||||||| ||||||||    
T  15317 aaggaagtacccggggaataccgggttcgatttccaggggaaa 15359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Original strand, 41097 - 41154
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||||||| ||| ||| ||||||||||| | ||||||    
T  41097 tctacgcacgagccggattagtcgcccatctttggtgagtcggaaaccggttcgaaag 41154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 599 - 656
Target Start/End: Complemental strand, 155767 - 155710
Alignment:
Q  599 tctacgtacgagtcggattagtcgcccattttttgtgggtcggaaaccgatgcgaaag 656  Q
    |||||| ||||| |||||||||||||||  ||| ||||||||||| ||| ||||||||    
T  155767 tctacgcacgagccggattagtcgcccacctttggtgggtcggaagccggtgcgaaag 155710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 271197 - 271140
Alignment:
Q  535 aaggacgtacccgggaaataccgggttcgatttctaggggaaataacgcttggtcagt 592  Q
    ||||||||||||||  |||| ||||||||||| | ||||| || ||||||||||||||    
T  271197 aaggacgtacccggagaatatcgggttcgattcccagggggaacaacgcttggtcagt 271140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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