View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644-Insertion-6 (Length: 582)
Name: NF5644-Insertion-6
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 30624636 - 30624064
Alignment:
| Q |
8 |
actaagttttcaaatttcgtaataaatcttaatacgtgttaggcaggtcatgtgtaaacttactaatatcaacatcaaccnnnnnnnnnnntctcaacac |
107 |
Q |
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| T |
30624636 |
actaagttttcaaatttcgtaataaatcttaatacgtgttaggcaggtcatgtgtaaacttactaatatcaacatcaaccaaaaaaaaaa-tctcaatac |
30624538 |
T |
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| Q |
108 |
tttattcaattatatatattttgtaagtaacatatactataactctcttttgtaatatcgattcttttattaaataaaatacaagtagctccgttaaaac |
207 |
Q |
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| T |
30624537 |
tttattcaattatatatattttgtaagtaacatatactataactctcttttgtaatatcgattcttttattaaataaaatacaagtagctccattaaaac |
30624438 |
T |
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| Q |
208 |
atgtttcatcaataagctatcaataaaaataggattgtatgtaagaccaacctctgttttattttttgacaaaccctacctttgttgtctttgtcaaaat |
307 |
Q |
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| T |
30624437 |
atgtttcatcaataagctagcaataaaaataggattgtatgtaagaccagcctctgttttattttttgacaaaccctacctttgttgtctttgtcaaaat |
30624338 |
T |
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| Q |
308 |
ttatgacgtacatcttcgttcatccgattttaaactcgtaattgaacagttgcatatgtgagttttaatgatatttgtcgatttatttttgacnnnnnnn |
407 |
Q |
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| T |
30624337 |
ttatgacgtacatcttcgttcatccgattttaaactcgttattgaacagttatatatgtgagttttaatgatatttgtcgatttatttttgacaacaaaa |
30624238 |
T |
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| Q |
408 |
taaaagttagacctaagtgttgttatcattatcacttgttttcaaaatttattttcttagaaatctaatgaggaaagaaaagagaaatgacaaatgagtg |
507 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
30624237 |
taaaagttaga-gtaagtgttgttatcattatcacttgttttcaaaatttattttcttagaaatctaaaaaagaaagaaaagagaaatgacaaatgagtg |
30624139 |
T |
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| Q |
508 |
taagaataattcaagattccaacacgtaacaatggaaaacaacatctatagggtaccccacatggtgcataatct |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30624138 |
taagaataattcaagattccaacacgtaacaatggaaaacaacatctataggataccccacatggtgcataatct |
30624064 |
T |
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