View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644-Insertion-7 (Length: 442)
Name: NF5644-Insertion-7
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Original strand, 14748961 - 14749390
Alignment:
| Q |
11 |
accatacaccacatcactttagaggtaaaagatggggtgaataaaaaggtttatgaagccaaggtttgggaaaagtcttggatgaacttcaaggaggtgc |
110 |
Q |
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| T |
14748961 |
accatacaccacatcactttagaggtaaaagatggggtgaataaaaaggtttatgaagccaaggtttgggaaaagtcttggatgaacttcaaggaggttc |
14749060 |
T |
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| Q |
111 |
aacagttcaagctcgtcgaagatgcgcctgcgcagtaaagcgcttaactaggtattttattacactgcataactgctcctgtctgttgttttaagtatga |
210 |
Q |
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| T |
14749061 |
aagagttcaagctcgtcgaagatgcgcctgcgcagtaaagcgcttaactaggtattttattacattgcataactcctcctgtctgttgttttaaatatga |
14749160 |
T |
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| Q |
211 |
agggtttatgaagttataatgaatgcaaatcttcaatgttacttgctagtttttgtggacagatgaatgaaaaaatgggttttgaatgattaggggaaga |
310 |
Q |
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| T |
14749161 |
agggtttatgaagttataatgaatgcaaatcttcaatgttacttgctagtttttgtggacagatgaatgaaaaaatgggttttgaatgattaggggaaga |
14749260 |
T |
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| Q |
311 |
aatgggttaagggaattagaacatgatgttttagatcagtttcaggtttagtaatgggcttatttatcaattaatgtgcttttgagtttgatgaatgata |
410 |
Q |
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| T |
14749261 |
aatgggttaagggaattagaacatgatgttttagatcagtttcaggtttagtaatgggcttatttatcaattaatgtgc--ttgagtttgatgaatgata |
14749358 |
T |
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| Q |
411 |
atgttttttcactttgtcgttcctcggtgaaa |
442 |
Q |
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| T |
14749359 |
atgttctttcattttgtcgttcctcggtgaaa |
14749390 |
T |
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