View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5644-Insertion-9 (Length: 364)

Name: NF5644-Insertion-9
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5644-Insertion-9
NF5644-Insertion-9
[»] scaffold0179 (2 HSPs)
scaffold0179 (7-140)||(32025-32158)
scaffold0179 (156-219)||(32135-32197)
[»] chr8 (12 HSPs)
chr8 (81-177)||(287376-287473)
chr8 (114-177)||(10895918-10895981)
chr8 (114-178)||(12167183-12167247)
chr8 (114-178)||(12411611-12411675)
chr8 (114-178)||(16291969-16292033)
chr8 (110-177)||(27521155-27521222)
chr8 (114-177)||(23136513-23136577)
chr8 (117-208)||(287306-287397)
chr8 (114-177)||(8362365-8362428)
chr8 (114-177)||(17890878-17890941)
chr8 (117-177)||(18666851-18666911)
chr8 (81-177)||(45250970-45251066)
[»] chr2 (3 HSPs)
chr2 (81-176)||(45049549-45049645)
chr2 (114-178)||(5243263-5243327)
chr2 (116-177)||(16311610-16311671)
[»] scaffold0022 (1 HSPs)
scaffold0022 (114-177)||(101151-101214)
[»] chr4 (4 HSPs)
chr4 (81-177)||(24047-24144)
chr4 (114-171)||(14288151-14288208)
chr4 (114-177)||(18066731-18066794)
chr4 (81-190)||(13914707-13914817)
[»] chr1 (3 HSPs)
chr1 (114-177)||(3417361-3417424)
chr1 (81-203)||(8313991-8314114)
chr1 (114-177)||(22544164-22544227)
[»] chr3 (6 HSPs)
chr3 (114-177)||(20919317-20919380)
chr3 (114-177)||(20928279-20928342)
chr3 (114-177)||(37197878-37197941)
chr3 (81-177)||(9270720-9270816)
chr3 (81-177)||(6440828-6440925)
chr3 (81-177)||(50246567-50246663)
[»] chr6 (4 HSPs)
chr6 (114-177)||(1607978-1608043)
chr6 (114-177)||(27434763-27434826)
chr6 (114-177)||(4856920-4856985)
chr6 (114-177)||(11550297-11550362)
[»] scaffold0018 (1 HSPs)
scaffold0018 (116-177)||(67248-67309)
[»] chr5 (3 HSPs)
chr5 (84-177)||(19205875-19205968)
chr5 (114-178)||(29857744-29857808)
chr5 (114-177)||(27588673-27588736)
[»] scaffold0059 (2 HSPs)
scaffold0059 (114-177)||(67190-67253)
scaffold0059 (114-177)||(75295-75358)
[»] scaffold0003 (1 HSPs)
scaffold0003 (114-177)||(52537-52600)
[»] chr7 (2 HSPs)
chr7 (114-177)||(29494036-29494099)
chr7 (117-177)||(7946490-7946550)
[»] scaffold0289 (1 HSPs)
scaffold0289 (81-177)||(22089-22185)


Alignment Details
Target: scaffold0179 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 32025 - 32158
Alignment:
Q  7 aactccatgcttttcaaaacacacaaaaagcattttcatgggaggaaaatgtagatgaaagtaatg-nnnnnnnnttgtctatatgtaggaaaagaatta 105  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||         |||||||||||| |||||| |||||    
T  32025 aactccatgcttttcaaaacacacaaaatgcattttcatgggaggaagatgtagatgaaagtaatgaaaaaaaaattgtctatatgtgggaaaa-aatta 32123  T
Q  106 tatgatggtcaattttgattggctgatgaaaaata 140  Q
    ||||||| |||||||||||||| ||||||||||||    
T  32124 tatgatgatcaattttgattggttgatgaaaaata 32158  T

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Target: scaffold0179; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 32135 - 32197
Alignment:
Q  156 attttgattggctaataaaaaagtatcaaatgagatatgaaatgtgaaaatgcagcttgtattt 219  Q
    ||||||||||| | || ||||| |||||||||||||| |||| |||||||||||||||||||||    
T  32135 attttgattggttgatgaaaaa-tatcaaatgagataagaaacgtgaaaatgcagcttgtattt 32197  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 287473 - 287376
Alignment:
Q  81 ttgtctatatgtaggaaaagaa-ttatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||||||| || |||| | ||| |||||||||||||||| || ||||||||| || |||||  ||||||||||||||||||||||||    
T  287473 ttgtctatatataggaaaaaaaattatgtcatgatcaattttgattggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaa 287376  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 10895981 - 10895918
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||||| |||||||||||| || |||||  |||||||||||| |||||||||||    
T  10895981 tcaattttgattggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaa 10895918  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 12167183 - 12167247
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaag 178  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||||||||| ||||| |||||    
T  12167183 tcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaag 12167247  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 12411611 - 12411675
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaag 178  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||||||||| ||||| |||||    
T  12411611 tcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaag 12411675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 16292033 - 16291969
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaag 178  Q
    ||||||||||||| || |||||||||||| || |||||  ||||||||||||| |||||||||||    
T  16292033 tcaattttgattgactcatgaaaaataaatgagtcatgatccattttgattggataataaaaaag 16291969  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 27521155 - 27521222
Alignment:
Q  110 atggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||||||||| |||||||| |||  | |||||  ||||||||||||||| ||||||||    
T  27521155 atggtcaattttgattggctcatgaaaaagaaattagtcatgatccattttgattggctgataaaaaa 27521222  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 23136577 - 23136513
Alignment:
Q  114 tcaattttgattggctgatgaaaaata-aaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| ||||||||||||| || ||||  ||||| | |||||||||||||||||||||||    
T  23136577 tcaattttgactggctgatgaaaactataaagtgtcatgaatcattttgattggctaataaaaaa 23136513  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 287397 - 287306
Alignment:
Q  117 attttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaagtatcaaatgagatatgaaatgtgaaaatgc 208  Q
    ||||||||||||| || ||||||||| || |||||  | ||||||||||| | || ||||||||| ||||||||   ||||| |||||||||    
T  287397 attttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagtattaaatgagaagagaaatttgaaaatgc 287306  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 8362428 - 8362365
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  8362428 tcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 8362365  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 17890878 - 17890941
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||||| |||| || |||||  || | |||||||||||||||||||    
T  17890878 tcaattttgattggctggtgaaaactaaatgagtcatggtccgtcttgattggctaataaaaaa 17890941  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 18666911 - 18666851
Alignment:
Q  117 attttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  18666911 attttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 18666851  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 45250970 - 45251066
Alignment:
Q  81 ttgtctatatgtaggaaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||||||| ||| |    ||| |||||||||||||| ||||||||| |||| || |||||   ||| ||||| |||||||||||||    
T  45250970 ttgtctatatataggaaaaaaatcaaggcatgatcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgatcggctaataaaaaa 45251066  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 45049645 - 45049549
Alignment:
Q  81 ttgtctatatgtaggaaaagaatt-atatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaa 176  Q
    |||||||||| |||||||| || | || | ||| |||||||||||||||| |||||||||||| || |||||  |||||||||||||||||||||||    
T  45049645 ttgtctatatataggaaaaaaaatcatgtcatgatcaattttgattggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaa 45049549  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 178
Target Start/End: Original strand, 5243263 - 5243327
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaag 178  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||||||||| ||||| |||||    
T  5243263 tcaattttgattggctcatgaaaaataaatgagtcatgatccattttgattggataatagaaaag 5243327  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 16311610 - 16311671
Alignment:
Q  116 aattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||| |||| || |||||  |||||||||||  |||||||||||    
T  16311610 aattttgattggctgataaaaattaaatgagtcatgatccattttgattaactaataaaaaa 16311671  T

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Target: scaffold0022 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 101214 - 101151
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||||| |||||||||||| || |||||  ||||||||||||||||||||||||    
T  101214 tcaattttgattggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaa 101151  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 24047 - 24144
Alignment:
Q  81 ttgtctatatgtaggaaaagaatt-atatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||||||| || | || | ||| |||||||||||||||| |||||||||||| || ||||   ||||||||||||||||||||||||    
T  24047 ttgtctatatataggaaaaaaaatcatgtcatgatcaattttgattggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaa 24144  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 14288151 - 14288208
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaat 171  Q
    |||||||||||||||| |||||||||||| || |||||   |||||||||||||||||    
T  14288151 tcaattttgattggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 18066731 - 18066794
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| || |||||| |||| || |||||  |||| |||||||||||||||||||    
T  18066731 tcaattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaa 18066794  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 13914707 - 13914817
Alignment:
Q  81 ttgtctatatgtaggaaaagaatt-atatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaagt 179  Q
    |||||||||| |||||||| || | || | ||| |||||||||||||||| || ||||||||| || |||||  | ||||||||||| | || ||||||     
T  13914707 ttgtctatatataggaaaaaaaatcatgtaatgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagc 13914806  T
Q  180 atcaaatgaga 190  Q
    || ||||||||    
T  13914807 attaaatgaga 13914817  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 3417424 - 3417361
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||||||||||||||| || |||||  |||||||||||| |||||| ||||    
T  3417424 tcaattttgattggctgatgaaaaataaatgagtcatgatccattttgattgactaatagaaaa 3417361  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 203
Target Start/End: Original strand, 8313991 - 8314114
Alignment:
Q  81 ttgtctatatgtaggaaaagaatt-atatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaagt 179  Q
    |||||||||| |||||||| || | || | ||| |||||||||||||||| || ||||||||| || |||||  | ||||||||||| | ||||||||      
T  8313991 ttgtctatatataggaaaaaaaatcatgtcatgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaaac 8314090  T
Q  180 atcaaatgagatatgaaatgtgaa 203  Q
    || |||||||| | ||||| ||||    
T  8314091 attaaatgagaaaagaaatttgaa 8314114  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 22544164 - 22544227
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  22544164 tcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 22544227  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 20919380 - 20919317
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||||| |||| |  ||||| | |||||||||||||||||||||||    
T  20919380 tcaattttgattggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaa 20919317  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 20928342 - 20928279
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||||| |||| |  ||||| | |||||||||||||||||||||||    
T  20928342 tcaattttgattggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaa 20928279  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 37197941 - 37197878
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||||||||||||| |||| |  ||||| | |||||||||||| ||||||||||    
T  37197941 tcaattttgattggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaa 37197878  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 9270720 - 9270816
Alignment:
Q  81 ttgtctatatgtaggaaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||||||| ||| || | ||| |||||||| ||||||| |||||||||||| || |||||    ||||| |||||| |||||||||    
T  9270720 ttgtctatatataggaaaaaaatcatgtcatgatcaattttaattggctaatgaaaaataaatgagtcatgatttattttaattggcaaataaaaaa 9270816  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 6440828 - 6440925
Alignment:
Q  81 ttgtctatatgtagg-aaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||| |||| ||| || | ||| |||||||| |||| || |||||||||||| || |||||   ||||||||||||| |||||||||    
T  6440828 ttgtctatatatagggaaaaaaatcatgtcatgatcaattttaattgactaatgaaaaataaatgagtcatgattcattttgattggcaaataaaaaa 6440925  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 50246567 - 50246663
Alignment:
Q  81 ttgtctatatgtaggaaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||||||| ||| |    ||| ||| |||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  50246567 ttgtctatatataggaaaaaaatcaaggcatgatcacttttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 50246663  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 1607978 - 1608043
Alignment:
Q  114 tcaattttgattggctgatgaaaa--ataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||||||||||  ||||| |  ||||| | |||||||||||||||||||||||    
T  1607978 tcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggctaataaaaaa 1608043  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 27434826 - 27434763
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| || |||||| |||| || |||||  |||| |||||||||||||||||||    
T  27434826 tcaattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaa 27434763  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 4856920 - 4856985
Alignment:
Q  114 tcaattttgattggctgatgaaaa--ataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||||||||||  ||||| |  ||||| | |||||||||||| ||||||||||    
T  4856920 tcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggttaataaaaaa 4856985  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 11550362 - 11550297
Alignment:
Q  114 tcaattttgattggctgatgaaaa--ataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||||||||||  ||||| |  ||||| | |||||||||||| ||||||||||    
T  11550362 tcaattttgattggctgatgaaaactataaatgtgtcatgaatcattttgattggttaataaaaaa 11550297  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 67248 - 67309
Alignment:
Q  116 aattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| |||||||||||| || | |||  ||||||||||| ||||||||||||    
T  67248 aattttgattggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaa 67309  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 19205875 - 19205968
Alignment:
Q  84 tctatatgtaggaaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||| |||||||| ||| ||   ||| |||||||||||||||| |||||||||| | || |||||  |||||| |||||||||||| ||||    
T  19205875 tctatatataggaaaaaaatcatgatatgatcaattttgattggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaa 19205968  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 29857808 - 29857744
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaag 178  Q
    ||||||||||||| || |||||||||||| || |||||  ||||||||||||| ||||| |||||    
T  29857808 tcaattttgattgactcatgaaaaataaatgagtcatgatccattttgattggataatagaaaag 29857744  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 27588736 - 27588673
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  27588736 tcaattttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 27588673  T

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Target: scaffold0059 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 67190 - 67253
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||||| |||| |  ||||  | |||||||||||||||||||||||    
T  67190 tcaattttgattggctggtgaaaactaaatgtgtcataaatcattttgattggctaataaaaaa 67253  T

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Target: scaffold0059; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 75295 - 75358
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||||||||| |||||| |||| |  ||||  | |||||||||||||||||||||||    
T  75295 tcaattttgattggctggtgaaaactaaatgtgtcataaatcattttgattggctaataaaaaa 75358  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 52537 - 52600
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| || |||||| |||| || |||||  |||| |||||||||||||||||||    
T  52537 tcaattttgattggttggtgaaaactaaatgagtcatggtccatcttgattggctaataaaaaa 52600  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 29494099 - 29494036
Alignment:
Q  114 tcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  29494099 tcaattttgattggttgatgaaaactaaatgagtcatgattcatcttgattggctaataaaaaa 29494036  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 7946490 - 7946550
Alignment:
Q  117 attttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    ||||||||||| ||||||||| |||| || |||||   ||| |||||||||||||||||||    
T  7946490 attttgattggttgatgaaaactaaatgagtcatggttcatcttgattggctaataaaaaa 7946550  T

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Target: scaffold0289 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 22089 - 22185
Alignment:
Q  81 ttgtctatatgtaggaaaagaattatatgatggtcaattttgattggctgatgaaaaataaaagaatcatgtaccattttgattggctaataaaaaa 177  Q
    |||||||||| |||| ||| ||| || | ||| |||||||| ||||||| |||||||||||| || |||||    |||||||||| | |||||||||    
T  22089 ttgtctatatatagggaaaaaatcatgtcatgatcaattttaattggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaa 22185  T

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