View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_high_10 (Length: 309)
Name: NF5644_high_10
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 50076080 - 50076364
Alignment:
| Q |
9 |
gattattctcccgataaatattaattaataatacaaagtgtaacgaaggttgagtttatcataagtggttagactgtctaccataacacagcgaatcaaa |
108 |
Q |
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|||||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50076080 |
gattattctccccaaaaatattaattaata---caaaggctaacgaaggttgagtttatcataagtggttagactgcctaccataacacagcgaatcaaa |
50076176 |
T |
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| Q |
109 |
atttaagtccaagttaaaaatagaataatgaatacgagagaaaattccccccaaagaattaacact----ttaatcctcaataacaaaggagaacaagca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |
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| T |
50076177 |
atttaagtccaagttaaaaatagaataatgaatacgagagaaaattccccccaaagaattaaaactttaattaatcctcaataacaaaggagaacaaaca |
50076276 |
T |
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| Q |
205 |
gccacccacacttccctctttaattaacaatcttacaaaggccccgctcgaaagcaatattaataccaaaaaatagtactatccataat |
293 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
50076277 |
gccacccacacttccctcttgaagcaacaatcttacaaaggccccgctccaaagcaatattcataccaaaaaatagtac-atccataat |
50076364 |
T |
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