View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_high_2 (Length: 409)
Name: NF5644_high_2
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_high_2 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 15039070 - 15039463
Alignment:
| Q |
17 |
aattagtaattcgttactaaacatatactatgcaaaagtaacagtataaaatataatcaaagtccaccattattgatgcatctagttagaaacttaataa |
116 |
Q |
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| T |
15039070 |
aattagtaattcgttactaaacatatactatgcaaaagtaacagtataaaatataatcaaagtccaccattattgatgcatctagttagaaacttcataa |
15039169 |
T |
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| Q |
117 |
ttatgataacttgttcatgccacggtgatgttcttcatatacattttattatatataagtttccctcaaacaaaatgcataaaattaggataatcgaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
15039170 |
ttatgataacttgttcatgccacggtgatgttcttcatatacattttattatatataagtttccctcaaacaaaatgcataaaattagtataatcggaca |
15039269 |
T |
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| Q |
217 |
aaggtgaaagcctacctcgatagaaat-aaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatttc |
315 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||| | |||||| ||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
15039270 |
aaggtgaaagcctacctcgatacaaataaaaaaacacaattcccatatagcattttctgaaaataattgaaggtttcgtcaataaagatcacacaatttc |
15039369 |
T |
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| Q |
316 |
tgttaccaacacagaaacccgaagcacgatatattgtcttgtaacatattgacaaggaatgctattgttatattattgaaaccttggccgtctc |
409 |
Q |
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| T |
15039370 |
tgttaccaacacagaaacccgaagcacgatatattctcttgtaacatattgacaaggaatgctattgttatattattgaaaccttggctgtctc |
15039463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 15012808 - 15012935
Alignment:
| Q |
214 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
313 |
Q |
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| T |
15012808 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcattttctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
15012907 |
T |
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| Q |
314 |
tctgttaccaacacagaaacccgaagca |
341 |
Q |
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| T |
15012908 |
tctgttaccaacacagaaacccgaagca |
15012935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 15018256 - 15018382
Alignment:
| Q |
214 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
313 |
Q |
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||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| |
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| T |
15018256 |
acaaaggctaaagccaacctcgatacaaataaaaaacacaattccccgactgcattttctgaaaagaattgaagg-tttttcaataaagatcacacaatt |
15018354 |
T |
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| Q |
314 |
tctgttaccaacacagaaacccgaagca |
341 |
Q |
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| T |
15018355 |
tctgttaccaacacagaaacccgaagca |
15018382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 214 - 341
Target Start/End: Original strand, 15025374 - 15025500
Alignment:
| Q |
214 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
313 |
Q |
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||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| |
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| T |
15025374 |
acaaaggctaaagccaacctcgatacaaataaaaaacacaattccccgactgcattttctgaaaagaattgaagg-tttttcaataaagatcacacaatt |
15025472 |
T |
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| Q |
314 |
tctgttaccaacacagaaacccgaagca |
341 |
Q |
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| T |
15025473 |
tctgttaccaacacagaaacccgaagca |
15025500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 352 - 383
Target Start/End: Original strand, 15012967 - 15012998
Alignment:
| Q |
352 |
tcttgtaacatattgacaaggaatgctattgt |
383 |
Q |
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| T |
15012967 |
tcttgtaacatattgacaaggaatgctattgt |
15012998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 344 - 386
Target Start/End: Complemental strand, 2131582 - 2131540
Alignment:
| Q |
344 |
atatattgtcttgtaacatattgacaaggaatgctattgttat |
386 |
Q |
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| T |
2131582 |
atatattctcttgtaacatattgacaagtaatgctattgttat |
2131540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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