View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5644_high_5 (Length: 371)
Name: NF5644_high_5
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5644_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 47037403 - 47037064
Alignment:
| Q |
16 |
atcattctaatcactctatagcaatatgnnnnnnngaagacacttgcgttttttgtgaactatgttatcttgatgatgattgatcaaaatatgtgcaaat |
115 |
Q |
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| T |
47037403 |
atcattctaatcactctatatcaatatgttttttttaagacacttgcgttttttgtgaactatattatcttgatgatgatagatcaaaatatgtgcaaat |
47037304 |
T |
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| Q |
116 |
gcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggcccaacaaagcggcattagtttgaaac |
215 |
Q |
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| T |
47037303 |
gcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggcccaacaaagcggcattagtttgaaac |
47037204 |
T |
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| Q |
216 |
gtac-nnnnnnnnttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttgttgatatgtagaatgagcgagaca |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037203 |
gtacaaaaaaaatttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttgttgatatgtagaatgagcgagaca |
47037104 |
T |
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| Q |
315 |
ggtgaaagaatagtagtgctcaatctcaaagagtgttttg |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
47037103 |
ggtgaaagaatagtagtgctcaatctcaaagagtgttttg |
47037064 |
T |
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