View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5644_high_6 (Length: 360)

Name: NF5644_high_6
Description: NF5644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5644_high_6
NF5644_high_6
[»] chr4 (22 HSPs)
chr4 (14-347)||(19325206-19325546)
chr4 (179-245)||(20243600-20243667)
chr4 (178-305)||(12235821-12235942)
chr4 (250-306)||(9266785-9266841)
chr4 (186-247)||(15521967-15522029)
chr4 (208-292)||(5718745-5718827)
chr4 (178-288)||(46342521-46342630)
chr4 (212-292)||(46979101-46979180)
chr4 (206-292)||(11861799-11861883)
chr4 (204-284)||(12790921-12790999)
chr4 (185-275)||(13063948-13064037)
chr4 (234-292)||(24619175-24619231)
chr4 (204-245)||(13977716-13977757)
chr4 (232-295)||(55745733-55745793)
chr4 (232-295)||(55756344-55756404)
chr4 (256-292)||(12235804-12235840)
chr4 (252-292)||(13066937-13066977)
chr4 (250-306)||(14154545-14154601)
chr4 (186-284)||(15736285-15736382)
chr4 (251-295)||(18394031-18394075)
chr4 (254-294)||(32491406-32491446)
chr4 (232-275)||(56034108-56034149)
[»] chr3 (14 HSPs)
chr3 (178-306)||(19264203-19264328)
chr3 (205-306)||(4507721-4507820)
chr3 (178-292)||(31779237-31779349)
chr3 (185-294)||(8109325-8109433)
chr3 (251-294)||(7921292-7921335)
chr3 (251-306)||(12756036-12756091)
chr3 (251-294)||(13931454-13931497)
chr3 (232-295)||(5866171-5866231)
chr3 (232-295)||(5876770-5876830)
chr3 (232-295)||(20720813-20720873)
chr3 (232-303)||(932362-932431)
chr3 (232-294)||(13373141-13373200)
chr3 (232-294)||(13394329-13394388)
chr3 (266-306)||(19307370-19307410)
[»] scaffold0040 (2 HSPs)
scaffold0040 (179-305)||(8206-8331)
scaffold0040 (251-292)||(8307-8348)
[»] chr5 (11 HSPs)
chr5 (186-284)||(19642401-19642498)
chr5 (185-306)||(12860201-12860321)
chr5 (178-294)||(20689715-20689830)
chr5 (17-74)||(6038175-6038232)
chr5 (214-293)||(18325858-18325935)
chr5 (204-247)||(17241263-17241306)
chr5 (205-244)||(19903197-19903236)
chr5 (178-239)||(36740718-36740780)
chr5 (178-240)||(22185618-22185681)
chr5 (209-247)||(17241212-17241250)
chr5 (250-278)||(26783829-26783857)
[»] chr1 (16 HSPs)
chr1 (178-294)||(16533978-16534093)
chr1 (209-294)||(35895685-35895768)
chr1 (204-289)||(11104934-11105017)
chr1 (178-294)||(43283023-43283138)
chr1 (178-247)||(14969054-14969123)
chr1 (185-303)||(9558639-9558755)
chr1 (178-245)||(15440366-15440433)
chr1 (178-307)||(20758438-20758566)
chr1 (186-306)||(19965691-19965809)
chr1 (209-294)||(31587344-31587428)
chr1 (233-284)||(19019590-19019639)
chr1 (250-290)||(22639779-22639819)
chr1 (250-294)||(8698352-8698396)
chr1 (178-245)||(17089004-17089072)
chr1 (254-302)||(17497094-17497142)
chr1 (254-294)||(26703071-26703111)
[»] chr7 (17 HSPs)
chr7 (178-294)||(5075762-5075877)
chr7 (178-292)||(23799950-23800062)
chr7 (195-241)||(8259036-8259082)
chr7 (251-306)||(9802687-9802742)
chr7 (232-305)||(17891760-17891832)
chr7 (232-306)||(602275-602346)
chr7 (251-294)||(11572819-11572862)
chr7 (251-306)||(19141856-19141911)
chr7 (251-306)||(20741255-20741310)
chr7 (251-294)||(23125437-23125480)
chr7 (211-294)||(4448769-4448851)
chr7 (251-292)||(15304135-15304176)
chr7 (232-295)||(24734437-24734497)
chr7 (232-295)||(24744384-24744444)
chr7 (232-295)||(26390652-26390712)
chr7 (232-295)||(26401294-26401354)
chr7 (266-306)||(9063570-9063610)
[»] chr6 (11 HSPs)
chr6 (178-302)||(15586187-15586310)
chr6 (178-306)||(30701770-30701897)
chr6 (178-241)||(6561360-6561424)
chr6 (177-290)||(11130468-11130580)
chr6 (251-294)||(14923822-14923865)
chr6 (232-306)||(7751691-7751762)
chr6 (232-306)||(14070635-14070707)
chr6 (204-233)||(21946559-21946588)
chr6 (232-306)||(27384103-27384173)
chr6 (232-306)||(27474487-27474557)
chr6 (232-306)||(27503985-27504055)
[»] chr2 (16 HSPs)
chr2 (195-294)||(22268297-22268395)
chr2 (204-289)||(13112811-13112894)
chr2 (178-292)||(24109869-24109982)
chr2 (178-245)||(26704204-26704271)
chr2 (252-306)||(16587529-16587583)
chr2 (250-294)||(14794394-14794438)
chr2 (204-247)||(33013963-33014007)
chr2 (256-306)||(22312294-22312344)
chr2 (252-294)||(22774032-22774074)
chr2 (232-295)||(11395666-11395726)
chr2 (232-295)||(11405982-11406042)
chr2 (179-232)||(27760777-27760830)
chr2 (251-306)||(16934039-16934095)
chr2 (232-294)||(29243897-29243956)
chr2 (232-294)||(34790711-34790770)
chr2 (232-294)||(34804854-34804913)
[»] chr8 (14 HSPs)
chr8 (185-305)||(29772085-29772205)
chr8 (185-290)||(29757936-29758040)
chr8 (179-266)||(18528392-18528478)
chr8 (189-307)||(29231423-29231537)
chr8 (179-289)||(28801203-28801311)
chr8 (209-294)||(10649866-10649950)
chr8 (178-294)||(33925896-33926013)
chr8 (251-294)||(1210364-1210407)
chr8 (251-292)||(24498726-24498767)
chr8 (232-294)||(15781219-15781278)
chr8 (232-294)||(15791808-15791867)
chr8 (250-294)||(16206753-16206797)
chr8 (250-278)||(17442471-17442499)
chr8 (252-304)||(22167521-22167573)
[»] scaffold1190 (1 HSPs)
scaffold1190 (210-306)||(841-936)
[»] scaffold0010 (1 HSPs)
scaffold0010 (178-247)||(135732-135801)
[»] scaffold0758 (1 HSPs)
scaffold0758 (251-294)||(3768-3811)
[»] scaffold0022 (1 HSPs)
scaffold0022 (266-307)||(158652-158693)
[»] scaffold0002 (1 HSPs)
scaffold0002 (253-294)||(111866-111907)
[»] scaffold0103 (1 HSPs)
scaffold0103 (251-306)||(16181-16237)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 347
Target Start/End: Original strand, 19325206 - 19325546
Alignment:
Q  14 tgggaagctgaagatttgaaacagactctgaagaggccaagcatctgaaggtctgaagactcaga-------aagactataaagccacgtcagcatcaga 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||| |||||||||| ||||||||||||    
T  19325206 tgggaagctgaagatttgaaacagactctgaagaggccaagcatctgaaggtctgaagactcagaggatatcaagaatataaagccaagtcagcatcaga 19325305  T
Q  107 agcctttgaccaatttttcgtcttcagaggaagggtcgctttcagcctctgataatacaatttgtaagttagattgtttatcaagtgtaaaataaaccaa 206  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19325306 agcctctgaccagtttttcgtcttcagaggaagggtcgctttcagcctctgataatacaatttgtaagttagattgtttatcaagtgtaaaataaaccaa 19325405  T
Q  207 tcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19325406 tcttttatttgattaagttagattgtagaactctctttcttgattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 19325505  T
Q  307 acaatgaggagaagnnnnnnngataaagttaagactagacc 347  Q
    ||||||| ||||||       ||||||||||||||||||||    
T  19325506 acaatgatgagaagaaaaaaagataaagttaagactagacc 19325546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 20243667 - 20243600
Alignment:
Q  179 attgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttc 245  Q
    ||||| ||||||||||||||  || ||||||||||||||||||||||||||||| |||||||||||||    
T  20243667 attgtatatcaagtgtaaaaccaaacaatcttttatttgattaagttagattgtaagaagtctctttc 20243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 305
Target Start/End: Complemental strand, 12235942 - 12235821
Alignment:
Q  178 gattgtttatcaagtgtaaaataaac-caatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||||||||||||| || |  ||||||||||||||||||||||||||||||||||| | |        |||||||| ||||| |||||||||||    
T  12235942 gattgtatatcaagtgtaaattacatacaatcttttatttgattaagttagattgtagaagtattt-------gtgtgcttgcgcattggaagtctcttt 12235850  T
Q  277 cttgtgtgattgagcattgaaagtctctt 305  Q
    ||||| ||||||| ||||  |||||||||    
T  12235849 cttgtttgattgatcatttgaagtctctt 12235821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 9266841 - 9266785
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||    
T  9266841 ttgtgcttgagcatatgaagtctcttgcttgtgtgcttgagtattgaaagtctcttg 9266785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 15521967 - 15522029
Alignment:
Q  186 atcaagtgtaaaa-taaaccaatcttttatttgattaagttagattgtagaagtctctttctt 247  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||| |||| ||||||||    
T  15521967 atcaagtgtaaaacttaaacaatcttttatttgattaagttagattgtaaaagtttctttctt 15522029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 5718745 - 5718827
Alignment:
Q  208 cttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    |||| |||||||||||||||||| || |||| ||||||  | ||||| ||||||||| ||||||||||||||||| | |||||||    
T  5718745 ctttaatttgattaagttagattatataagtgtctttc--agttgtgattgagcattagaagtctctttcttgtgcgtttgagca 5718827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 288
Target Start/End: Complemental strand, 46342630 - 46342521
Alignment:
Q  178 gattgtttatcaagtgtaaaataa-accaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| |||||||||||||| |  | ||||| ||||||||||||||||||||| ||||| | ||||||||   |||| ||||||| |  ||||||||||    
T  46342630 gattgtatatcaagtgtaaaaaatcaacaatcctttatttgattaagttagattttagaaatttctttctt--gtgtgattgagcaatataagtctcttt 46342533  T
Q  277 cttgtgtgattg 288  Q
    |||||| |||||    
T  46342532 cttgtgcgattg 46342521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 46979180 - 46979101
Alignment:
Q  212 tatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    ||||||||||||||||||||||||||||||||| | | ||||| |||||||    |||||| |||||| ||||||||||||    
T  46979180 tatttgattaagttagattgtagaagtctcttt-tcagttgtgattgagcagaaaaagtctatttcttatgtgattgagca 46979101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 292
Target Start/End: Complemental strand, 11861883 - 11861799
Alignment:
Q  206 atcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    ||||||||| ||||||| ||||||||||||||||||||  ||| ||||| || ||||||  |||||  ||| |||||||||||||||    
T  11861883 atcttttatctgattaaattagattgtagaagtctctt--ttagttgtgattaagcattaaaagtcattttattgtgtgattgagca 11861799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 12790999 - 12790921
Alignment:
Q  204 caatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtg 284  Q
    |||| |||||| ||||||||||||||||||||||| ||||||  | ||||| ||||| |   |||||||||||||||||||    
T  12790999 caattttttatatgattaagttagattgtagaagtttctttc--atttgtgattgagtagaggaagtctctttcttgtgtg 12790921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 13063948 - 13064037
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctt 275  Q
    ||||||||||||||  || |||| |||||| | ||||||||||||||| |||||||| ||||  | ||||| ||||||||| ||||||||||    
T  13063948 tatcaagtgtaaaaccaaacaatgttttatcttattaagttagattgtgagaagtctttttc--agttgtgattgagcattagaagtctctt 13064037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 24619231 - 24619175
Alignment:
Q  234 gaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    |||||||||| |||  |||||||||||||||| ||||||||| |||||||| |||||||    
T  24619231 gaagtctcttgctt--ttgtgcttgagcatttaaagtctcttgcttgtgtgcttgagca 24619175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 245
Target Start/End: Original strand, 13977716 - 13977757
Alignment:
Q  204 caatcttttatttgattaagttagattgtagaagtctctttc 245  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  13977716 caattttttatttgattaagttaaattgtagaagtctttttc 13977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 55745733 - 55745793
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  55745733 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 55745793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 55756344 - 55756404
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  55756344 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 55756404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 12235840 - 12235804
Alignment:
Q  256 ttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    |||| |||||||||||||||||||||||| |||||||    
T  12235840 ttgatcatttgaagtctctttcttgtgtgcttgagca 12235804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 13066937 - 13066977
Alignment:
Q  252 gtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    ||||||||||||| |||||||||| |||||||| |||||||    
T  13066937 gtgcttgagcattcgaagtctcttacttgtgtgcttgagca 13066977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 14154545 - 14154601
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||||||||||| ||||||||||  ||||||  |||||||| | ||||||||||    
T  14154545 ttgtgcttgagcattagaagtctcttgattgtgttcttgagcataggaagtctcttg 14154601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 15736382 - 15736285
Alignment:
Q  186 atcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtg 284  Q
    |||||||||||||  || ||||  || |||||||||||||||| ||| |||||||||||  | | ||||| || |||||| |||||||||| ||||||||    
T  15736382 atcaagtgtaaaaccaaacaattgttgatttgattaagttagaatgtgagaagtctctt--taagttgtgattaagcattagaagtctcttgcttgtgtg 15736285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 18394075 - 18394031
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||| |||||||||||||| |||||||  ||||||||||    
T  18394075 tgtgcttgagtatttgaagtctcttgcttgtgttcttgagcattg 18394031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 32491406 - 32491446
Alignment:
Q  254 gcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||| |||||||||||||| |||||||| |||||||||    
T  32491406 gcttgagtatttgaagtctcttgcttgtgtgcttgagcatt 32491446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 275
Target Start/End: Complemental strand, 56034149 - 56034108
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctt 275  Q
    |||||||||||| |  ||||||||||||||||||||||||||||    
T  56034149 tagaagtctcttgc--aattgtgcttgagcatttgaagtctctt 56034108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 19264328 - 19264203
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttc 277  Q
    |||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   |||| ||||| | | |||||||| |||    
T  19264328 gattgtatattaagtgtaaaatcaaacaatcttttatttgattaagttagattgtagaagtctctttctt--gtgtgattgagaaatagaagtctc-ttc 19264232  T
Q  278 ttgtgtgattgagcattgaaagtctcttg 306  Q
    |||| || |||||||| | ||||||||||    
T  19264231 ttgtatggttgagcataggaagtctcttg 19264203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 205 - 306
Target Start/End: Complemental strand, 4507820 - 4507721
Alignment:
Q  205 aatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctct 304  Q
    ||||||||||||||||||||| ||||||||||||||||| ||  | |||| ||||||||| ||||||||||||||||  ||| ||||||| |||||||||    
T  4507820 aatcttttatttgattaagttcgattgtagaagtctcttact--agtgtgtttgagcattggaagtctctttcttgtacgatcgagcatttaaagtctct 4507723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 31779349 - 31779237
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttc 277  Q
    |||||| ||||||||||||||   |  ||| |||||||| |||||||||||||| |||||||||||||  |||| || |||||||    |||||||||||    
T  31779349 gattgtatatcaagtgtaaaacccaataatattttatttaattaagttagattgcagaagtctctttc--aattatgattgagcagaaaaagtctctttc 31779252  T
Q  278 ttgtgtgattgagca 292  Q
    |||||||||| ||||    
T  31779251 ttgtgtgattaagca 31779237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 8109433 - 8109325
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgt 283  Q
    ||||||||||||||  || ||||||||||||||||||| ||||||||| | |||||||||||  | || || || |||||| ||||| |||| ||| |||    
T  8109433 tatcaagtgtaaaaccaaacaatcttttatttgattaatttagattgtaaaaagtctctttc--atttatgatttagcattagaagtttcttacttatgt 8109336  T
Q  284 gattgagcatt 294  Q
    | |||||||||    
T  8109335 gcttgagcatt 8109325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 7921292 - 7921335
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||    
T  7921292 tgtgcttgagcatatgaagtctcttgcttgtgtgcttgagcatt 7921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 12756036 - 12756091
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||| |||||| ||||||||||||   |||||||||||||||||| |||||||    
T  12756036 tgtgcttaagcattggaagtctctttcaattgtgattgagcattgaaaatctcttg 12756091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 13931497 - 13931454
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  13931497 tgtgcttgagtatttgaagtctcttgcttgtgtgcttgagcatt 13931454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 5866171 - 5866231
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  5866171 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 5866231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 5876770 - 5876830
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  5876770 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 5876830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 20720873 - 20720813
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  20720873 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 20720813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 932431 - 932362
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctc 303  Q
    |||||||||||| |||  ||||||||||||||  ||| |||||| |||||||||||||| |||  |||||||    
T  932431 tagaagtctcttgctt--ttgtgcttgagcataagaaatctcttgcttgtgtgattgagtatttgaagtctc 932362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 13373141 - 13373200
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  13373141 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 13373200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 13394329 - 13394388
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  13394329 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 13394388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 19307370 - 19307410
Alignment:
Q  266 gaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  19307370 gaagtctctttcagttgtgattgagcattgaaagtctcttg 19307410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 305
Target Start/End: Original strand, 8206 - 8331
Alignment:
Q  179 attgtttatcaagtgtaaaata-aaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttc 277  Q
    ||||| ||||||||||||||   || |||||||||||||||||| |||||| ||||||||||||||||||   | |||||||||||| |||| ||||| |    
T  8206 attgtatatcaagtgtaaaagccaaacaatcttttatttgattaggttagaatgtagaagtctctttctt--gtatgcttgagcattggaagcctcttgc 8303  T
Q  278 ttgtgtgattgagcattgaaagtctctt 305  Q
    ||||||| |||||||||| |||||||||    
T  8304 ttgtgtgcttgagcattggaagtctctt 8331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 8307 - 8348
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  8307 tgtgcttgagcattggaagtctctttcttgtttgattaagca 8348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 284
Target Start/End: Original strand, 19642401 - 19642498
Alignment:
Q  186 atcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttg-aagtctctttcttgtgtg 284  Q
    |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||| ||||| ||||||||    
T  19642401 atcaagtgtaaaatcaaataatcttttatttgattaagttagattgtagaagtctctttc--aattgtgattgagcatttgaaagcctcttacttgtgtg 19642498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 12860201 - 12860321
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttga-agtctctttcttgtgt 283  Q
    |||||||| |||||| || || |||||||||||||||||||||||||||||||||||||||  | ||||| |||||||||||| ||  |||| |||||||    
T  12860201 tatcaagtataaaatcaaacagtcttttatttgattaagttagattgtagaagtctctttc--agttgtgattgagcatttgagagcatcttgcttgtgt 12860298  T
Q  284 gattgagcattgaaagtctcttg 306  Q
    | |||| ||||| ||||||||||    
T  12860299 gcttgaacattggaagtctcttg 12860321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 20689830 - 20689715
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||  | || || ||  ||||| ||||||||||     
T  20689830 gattgtatatcaagtgtaaaatcaaacaatcttttatttgattaagtttgattgtgagaagtctctttc--agttatgattaggcattagaagtctcttg 20689733  T
Q  277 cttgtgtgattgagcatt 294  Q
    |||||||| |||||||||    
T  20689732 cttgtgtgcttgagcatt 20689715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6038232 - 6038175
Alignment:
Q  17 gaagctgaagatttgaaacagactctgaagaggccaagcatctgaaggtctgaagact 74  Q
    ||||||||||||||| |||| ||| |||| ||| ||||||||||||||||||||||||    
T  6038232 gaagctgaagatttggaacacactttgaaaaggtcaagcatctgaaggtctgaagact 6038175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 18325858 - 18325935
Alignment:
Q  214 tttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcat 293  Q
    ||||||||||||||||||| ||||| ||||  ||   ||||||||| |||| |||||||||||||||||||| |||||||    
T  18325858 tttgattaagttagattgtggaagtatcttgtttg--tgtgcttgaacattggaagtctctttcttgtgtgaatgagcat 18325935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 17241306 - 17241263
Alignment:
Q  204 caatcttttatttgattaagttagattgtagaagtctctttctt 247  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  17241306 caatcttttattcgattaagttagattgtagaagtctatttctt 17241263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 19903236 - 19903197
Alignment:
Q  205 aatcttttatttgattaagttagattgtagaagtctcttt 244  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  19903236 aatcttttatttgattaagttaaattgtagaagtctcttt 19903197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 36740718 - 36740780
Alignment:
Q  178 gattgtttatcaagtgtaaaata-aaccaatcttttatttgattaagttagattgtagaagtc 239  Q
    |||||| ||||||||||||||   || ||||||||||||||| ||||||||||||||||||||    
T  36740718 gattgtatatcaagtgtaaaacccaaacaatcttttatttgactaagttagattgtagaagtc 36740780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 22185681 - 22185618
Alignment:
Q  178 gattgtttatcaagtgtaaaa-taaaccaatcttttatttgattaagttagattgtagaagtct 240  Q
    |||||| |||||||||||||| |  | ||||||||||||||||||||||||||| |||| ||||    
T  22185681 gattgtatatcaagtgtaaaaatctaacaatcttttatttgattaagttagattatagatgtct 22185618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 17241250 - 17241212
Alignment:
Q  209 ttttatttgattaagttagattgtagaagtctctttctt 247  Q
    ||||||| |||||||||||||||||||||||| ||||||    
T  17241250 ttttattcgattaagttagattgtagaagtctatttctt 17241212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 26783857 - 26783829
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttct 278  Q
    |||||||||||||||||||||||||||||    
T  26783857 ttgtgcttgagcatttgaagtctctttct 26783829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 178 - 294
Target Start/End: Complemental strand, 16534093 - 16533978
Alignment:
Q  178 gattgtttatcaagtgtaaaata-aaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| |||||||||||||| | ||  ||| |||||||||||||||||||||||||||||| ||||  ||  ||||||||||||||| ||||||| |||    
T  16534093 gattgtatatcaagtgtaaaacacaaataattttttatttgattaagttagattgtagaagtttcttgttt--ttgtgcttgagcattggaagtcttttt 16533996  T
Q  277 cttgtgtgattgagcatt 294  Q
    || |||||||||||||||    
T  16533995 ctcgtgtgattgagcatt 16533978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 294
Target Start/End: Complemental strand, 35895768 - 35895685
Alignment:
Q  209 ttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||||| |||||||||||||||||||| |||   |||||||||||||| |||||||||||||||||||||||| ||||    
T  35895768 ttttatttgattaatttagattgtagaagtctcttgcttg--tgtgcttgagcattggaagtctctttcttgtgtgattgaccatt 35895685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 289
Target Start/End: Complemental strand, 11105017 - 11104934
Alignment:
Q  204 caatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattga 289  Q
    |||||||||||||||| ||||| |||||||||| ||||||||  ||||||| |||||||   |||||||||| |||||||||||||    
T  11105017 caatcttttatttgataaagtttgattgtagaaatctctttc--aattgtgattgagcaaaggaagtctcttccttgtgtgattga 11104934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 43283023 - 43283138
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||| ||||||||||  || |||||||||||||||| |||||||||||| |||| ||||||||  | ||||| ||||||||| ||||||| ||     
T  43283023 gattgtatataaagtgtaaaaccaaacaatcttttatttgatcaagttagattgtaagaactctctttc--agttgtgattgagcattagaagtctttta 43283120  T
Q  277 cttgtgtgattgagcatt 294  Q
    |||| ||| |||||||||    
T  43283121 cttgcgtgtttgagcatt 43283138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 14969054 - 14969123
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttctt 247  Q
    |||||| |||||||||| |||  || ||||||||||||||||||||||||||||||| ||| ||||||||    
T  14969054 gattgtatatcaagtgtgaaaccaaacaatcttttatttgattaagttagattgtagtagtatctttctt 14969123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 9558639 - 9558755
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtg 284  Q
    ||||||||||||||| || ||||||||||||| ||| ||||||||||||||| | ||||||||   | || ||||||| |  | |||| ||||||||||     
T  9558639 tatcaagtgtaaaatcaaacaatcttttatttaattcagttagattgtagaaatttctttctt--gtttgattgagcaatataggtctttttcttgtgtt 9558736  T
Q  285 attgagcattgaaagtctc 303  Q
    ||||||||  |||||||||    
T  9558737 attgagcaaagaaagtctc 9558755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 15440433 - 15440366
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttc 245  Q
    |||||| ||||||||||||||  || |||| |||||||||||| ||||||||||||||| ||||||||    
T  15440433 gattgtatatcaagtgtaaaactaaacaattttttatttgatttagttagattgtagaattctctttc 15440366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 307
Target Start/End: Complemental strand, 20758566 - 20758438
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||||||||||||||| || |||| ||||||||||||| | || ||||| |||||||||||||  | ||| | |||| ||||  |||||||||     
T  20758566 gattgtatatcaagtgtaaaatcaaacaattttttatttgattacgatatattgtgagaagtctctttc--agttgcgattgaacattataagtctcttg 20758469  T
Q  277 cttgtgtgattgagcattgaaagtctcttga 307  Q
    |||||||| |||| ||||| |||| ||||||    
T  20758468 cttgtgtgcttgaacattggaagtttcttga 20758438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 306
Target Start/End: Original strand, 19965691 - 19965809
Alignment:
Q  186 atcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtg 284  Q
    ||||||||||||   || ||||||||||||||||||||||||||||| | |||||||||  ||| ||||| ||||||||| |||||||| | |||  |||    
T  19965691 atcaagtgtaaatccaaacaatcttttatttgattaagttagattgtgataagtctctt--ttagttgtgattgagcattagaagtctcctgctt-agtg 19965787  T
Q  285 attgagcattgaaagtctcttg 306  Q
     |||||||||| ||| ||||||    
T  19965788 cttgagcattggaagactcttg 19965809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 31587344 - 31587428
Alignment:
Q  209 ttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttg-aagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||||||||||||| ||||||| ||||  ||||||||  ||||||||||| ||||| ||| |||||||  |||||||||    
T  31587344 ttttatttgattaagttagattatagaagtttctt--ttaattgtaattgagcatttgaaagtcccttgcttgtgtatttgagcatt 31587428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 19019590 - 19019639
Alignment:
Q  233 agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtg 284  Q
    |||||||||||||  | ||||| |||||||||||||||||||||||||||||    
T  19019590 agaagtctctttc--agttgtgattgagcatttgaagtctctttcttgtgtg 19019639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 22639819 - 22639779
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgag 290  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  22639819 ttgtgcttgagcatttgaagtctcttgcttgtgtgcttgag 22639779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 8698396 - 8698352
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||||||| ||||||||||| ||||||||||| |||| ||||    
T  8698396 ttgtgcttgagtatttgaagtctttttcttgtgtgcttgaacatt 8698352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 245
Target Start/End: Original strand, 17089004 - 17089072
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttc 245  Q
    |||||| |||||||| |||||  ||  ||| |||||||||||||||||||||||| | |||||||||||    
T  17089004 gattgtatatcaagtttaaaaccaaaaaatattttatttgattaagttagattgtaataagtctctttc 17089072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 17497094 - 17497142
Alignment:
Q  254 gcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtct 302  Q
    ||||||||||| ||||||||||||    |||||||||||||||||||||    
T  17497094 gcttgagcattagaagtctctttcagtagtgattgagcattgaaagtct 17497142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 26703111 - 26703071
Alignment:
Q  254 gcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||| |||||||||||||| |||||||| |||||||||    
T  26703111 gcttgagtatttgaagtctcttgcttgtgtgtttgagcatt 26703071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 5075762 - 5075877
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| | ||| ||||||||| || |||||||||||||||| |||||||||||| |||||||||||  ||| ||||| ||||||||| ||||||||||     
T  5075762 gattgtatttcaggtgtaaaatcaaacaatcttttatttgatcaagttagattgtgagaagtctctt--ttagttgtgattgagcattagaagtctcttg 5075859  T
Q  277 cttgtgtgattgagcatt 294  Q
    |||||||| |||| ||||    
T  5075860 cttgtgtgtttgaacatt 5075877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 178 - 292
Target Start/End: Complemental strand, 23800062 - 23799950
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttc 277  Q
    |||||| |||||| |||||||  || ||||||||||||||||||||||||||| || |||| | || |||   |||| |||||||||  |||||| ||||    
T  23800062 gattgtatatcaaatgtaaaaccaaacaatcttttatttgattaagttagattatataagttttttactt--gtgtgtttgagcattgaaagtctatttc 23799965  T
Q  278 ttgtgtgattgagca 292  Q
    |||||||||||||||    
T  23799964 ttgtgtgattgagca 23799950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 8259082 - 8259036
Alignment:
Q  195 aaaataaaccaatcttttatttgattaagttagattgtagaagtctc 241  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||    
T  8259082 aaaatcaaacaatcttttatttgattaagttagattgtagaagtctc 8259036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 9802742 - 9802687
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||||||||| ||||||||||| |||||||| |||||||| | ||||||||||    
T  9802742 tgtgcttgagcatgtgaagtctcttgcttgtgtgcttgagcataggaagtctcttg 9802687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 305
Target Start/End: Original strand, 17891760 - 17891832
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagca-ttgaaagtctctt 305  Q
    ||||||||||||||  | ||||| |||||||||  |||||||||||||||||| ||||||| |||||||||||||    
T  17891760 tagaagtctctttc--agttgtgattgagcattgaaagtctctttcttgtgtgtttgagcatttgaaagtctctt 17891832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 602346 - 602275
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| ||| |  |||||||||||| ||||||||||| |||||||| |||||||| | ||||||||||    
T  602346 tagaagtctcttgcttta--gtgcttgagcatctgaagtctcttacttgtgtgtttgagcatag-aagtctcttg 602275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 11572819 - 11572862
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  11572819 tgtgcttgagtatttgaagtctcttgcttgtgtgcttgagcatt 11572862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 19141911 - 19141856
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||||| ||||||||||||   | |||||||||||| |||||||||||    
T  19141911 tgtgcttgagcattggaagtctctttcagttatgattgagcattaaaagtctcttg 19141856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 20741310 - 20741255
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||||| ||||||||||||   | |||||||||||| |||||||||||    
T  20741310 tgtgcttgagcattggaagtctctttcagttatgattgagcattaaaagtctcttg 20741255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 23125480 - 23125437
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  23125480 tgtgcttgagtatttgaagtctcttgcttgtgtgcttgagcatt 23125437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 294
Target Start/End: Complemental strand, 4448851 - 4448769
Alignment:
Q  211 ttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||||||||||||| |||| |||| |||| |||  ||||||| ||||||| | |||||||||| ||||| || |||||||||    
T  4448851 ttatttgattaagttaggttgtaagaattctcattc--aattgtgattgagcaatagaagtctcttccttgtttggttgagcatt 4448769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Complemental strand, 15304176 - 15304135
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  15304176 tgtgcttgagcatatgaagtctcttgcttgtgtgcttgagca 15304135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 24734497 - 24734437
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  24734497 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 24734437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Complemental strand, 24744444 - 24744384
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  24744444 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 24744384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 26390652 - 26390712
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  26390652 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 26390712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 26401294 - 26401354
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  26401294 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 26401354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 9063610 - 9063570
Alignment:
Q  266 gaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| | ||||||||||||| ||||||||||||    
T  9063610 gaagtctctttcatttgtgattgagcatcgaaagtctcttg 9063570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 178 - 302
Target Start/End: Complemental strand, 15586310 - 15586187
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattg-tagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||||||||||||||| || ||| |||||||||||||||||||||| |  |||||||||||||  | |||| |||||| ||| ||||||||||     
T  15586310 gattgtatatcaagtgtaaaatcaaacaaccttttatttgattaagttagatagcgagaagtctctttc--agttgtacttgagaattagaagtctcttg 15586213  T
Q  277 cttgtgtgattgagcattgaaagtct 302  Q
    |||||||| || ||||||| ||||||    
T  15586212 cttgtgtgctttagcattgtaagtct 15586187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 30701770 - 30701897
Alignment:
Q  178 gattgtttatcaagtgtaaaa-taaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| |||||||||||||| | || || |||||||| | |||||||||||||||||||||||| |  ||| ||||| ||||| |||| ||||||||||    
T  30701770 gattgtatatcaagtgtaaaaatcaaacagtcttttatctaattaagttagattgtagaagtctcat--ttagttgtgattgagaatttaaagtctcttt 30701867  T
Q  277 cttgtgtgattgagcattgaaagtctcttg 306  Q
    | ||||||||||| ||  | ||||||||||    
T  30701868 catgtgtgattgatcaaaggaagtctcttg 30701897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 6561360 - 6561424
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctc 241  Q
    |||||| ||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  6561360 gattgtatatcaagtgtaaaatcaaacaatcttttatttgattaagttagattgtaagaagtctc 6561424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 11130580 - 11130468
Alignment:
Q  177 agattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcattt-gaagtctctt 275  Q
    ||||||| |||||  |||||||  || |||||||||||||||||||||||| ||||||| |||||||||  |  |||| |||||||||| ||||||||||    
T  11130580 agattgtatatcatttgtaaaaccaaacaatcttttatttgattaagttagcttgtagacgtctctttc--agctgtgattgagcatttggaagtctctt 11130483  T
Q  276 tcttgtgtgattgag 290  Q
     |||||||| |||||    
T  11130482 acttgtgtgtttgag 11130468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 14923822 - 14923865
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  14923822 tgtgcttgaatatttgaagtctctttcttgtgtgattgagcatt 14923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 7751691 - 7751762
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| |||  ||||||||||||||| |||||||||| |||  ||| |||||||||| ||||||||||    
T  7751691 tagaagtctcttgctt--ttgtgcttgagcattagaagtctcttgctt-agtgcttgagcattggaagtctcttg 7751762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 306
Target Start/End: Original strand, 14070635 - 14070707
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| ||| |  ||||||||||||  |||||||||| |||||||| |||||||| | ||||||||||    
T  14070635 tagaagtctcttgcttta--gtgcttgagcataagaagtctcttgcttgtgtgcttgagcataggaagtctcttg 14070707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 21946559 - 21946588
Alignment:
Q  204 caatcttttatttgattaagttagattgta 233  Q
    ||||||||||||||||||||||||||||||    
T  21946559 caatcttttatttgattaagttagattgta 21946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 27384173 - 27384103
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| ||||   ||||||||||||| |||||||||| |||  ||| |||||||||| ||||||||||    
T  27384173 tagaagtctcttgctta---gtgcttgagcattagaagtctcttgctt-agtgcttgagcattggaagtctcttg 27384103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 27474557 - 27474487
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| ||||   ||||||||||||| |||||||||| |||  ||| |||||||||| ||||||||||    
T  27474557 tagaagtctcttgctta---gtgcttgagcattagaagtctcttgctt-agtgcttgagcattggaagtctcttg 27474487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 27504055 - 27503985
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||| ||||   ||||||||||||| |||||||||| |||  ||| |||||||||| ||||||||||    
T  27504055 tagaagtctcttgctta---gtgcttgagcattagaagtctcttgctt-agtgcttgagcattggaagtctcttg 27503985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 294
Target Start/End: Complemental strand, 22268395 - 22268297
Alignment:
Q  195 aaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcattt-gaagtctctttcttgtgtgattgagcat 293  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||  |||| || |||||||||| ||| |||||| |||||||| || |||||    
T  22268395 aaaatcaaacaatcttttatttgattaagttagattgtagaagtctctttc--aattttgattgagcatttggaaatctcttgcttgtgtgcttaagcat 22268298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 204 - 289
Target Start/End: Original strand, 13112811 - 13112894
Alignment:
Q  204 caatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattga 289  Q
    ||||||||||||||||||||||  | |||||||||||||| |||  ||||||||||| |||  |||||||||||||||||||||||    
T  13112811 caatcttttatttgattaagttgcactgtagaagtctcttactt--ttgtgcttgagtattgaaagtctctttcttgtgtgattga 13112894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 24109869 - 24109982
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattg-tagaagtctctttcttaattgtgcttgagcatttgaagtctcttt 276  Q
    |||||| ||||||||||||||| || |||| |||||| |||||||||||||||| || || ||||||||  ||||||  |||| |||| ||||| |||||    
T  24109869 gattgtatatcaagtgtaaaattaaacaatattttatatgattaagttagattgttaaaattctctttc--aattgtaattgaacattagaagtttcttt 24109966  T
Q  277 cttgtgtgattgagca 292  Q
    ||||||||||| ||||    
T  24109967 cttgtgtgattaagca 24109982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 245
Target Start/End: Complemental strand, 26704271 - 26704204
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttc 245  Q
    |||||| |||||||| |||||  || |||| |||||||||||||||||||||| ||||||||||||||    
T  26704271 gattgtatatcaagtttaaaaccaaacaatattttatttgattaagttagattatagaagtctctttc 26704204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 16587529 - 16587583
Alignment:
Q  252 gtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||||||||| ||||||| |||| | ||||||||||||||| ||||||||||    
T  16587529 gtgcttgagcattggaagtctgtttcatttgtgattgagcattggaagtctcttg 16587583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 14794394 - 14794438
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||    
T  14794394 ttgtgcttgagtatttgaagtctcttacttgtgtgcttgagcatt 14794438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 33013963 - 33014007
Alignment:
Q  204 caatcttttatttgatt-aagttagattgtagaagtctctttctt 247  Q
    |||| |||||||||||| |||||||||||||||||||||||||||    
T  33013963 caatgttttatttgatttaagttagattgtagaagtctctttctt 33014007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 22312294 - 22312344
Alignment:
Q  256 ttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    ||||||||||||||||||| || |||||| |||||||||  ||||||||||    
T  22312294 ttgagcatttgaagtctctatcctgtgtgcttgagcattagaagtctcttg 22312344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 22774074 - 22774032
Alignment:
Q  252 gtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    ||||||||||||| |||||||||||| |||||| |||||||||    
T  22774074 gtgcttgagcattggaagtctctttcctgtgtgcttgagcatt 22774032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 11395666 - 11395726
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  11395666 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 11395726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 295
Target Start/End: Original strand, 11405982 - 11406042
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattg 295  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| ||||||||||    
T  11405982 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcattg 11406042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 27760777 - 27760830
Alignment:
Q  179 attgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt 232  Q
    ||||| ||||||||||||||  || ||||||||||| |||||| ||||||||||    
T  27760777 attgtatatcaagtgtaaaaccaaacaatcttttatatgattaggttagattgt 27760830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 16934039 - 16934095
Alignment:
Q  251 tgtgcttgagcatttg-aagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||| | ||||||||||    
T  16934039 tgtgattgagcatttggaagtctcttttttgtgtgcttgagcataggaagtctcttg 16934095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 29243956 - 29243897
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||||||||   ||||||||||||| |||| ||||| | |||||| |||||||||    
T  29243956 tagaagtctctttctta---gtgcttgagcattggaagactcttgcgtgtgtgcttgagcatt 29243897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 34790711 - 34790770
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  34790711 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 34790770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 34804854 - 34804913
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  34804854 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 34804913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 29772085 - 29772205
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgt 283  Q
    ||||||||||||||  ||  |||||||||||||||| ||||||||||| |||||||||  ||| ||||||| ||||||||| ||||| |||| |||| ||    
T  29772085 tatcaagtgtaaaaccaaataatcttttatttgattgagttagattgtaagaagtctc--tctcaattgtgattgagcattagaagtatcttgcttgggt 29772182  T
Q  284 gattgagca-ttgaaagtctctt 305  Q
    | ||||||| |||||||||||||    
T  29772183 gtttgagcatttgaaagtctctt 29772205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 290
Target Start/End: Original strand, 29757936 - 29758040
Alignment:
Q  185 tatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgt 283  Q
    ||||||||||||||  ||  ||| |||||| ||||||||||||||||| |||||||||  ||| ||||||| ||||||||| |||||||||| |||||||    
T  29757936 tatcaagtgtaaaaccaaataatattttatctgattaagttagattgtaagaagtctc--tctcaattgtgattgagcattagaagtctcttgcttgtgt 29758033  T
Q  284 gattgag 290  Q
    | |||||    
T  29758034 gcttgag 29758040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 18528392 - 18528478
Alignment:
Q  179 attgtttatcaagtgtaaaa-taaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttg 266  Q
    ||||| |||||||| ||||| | || |||||||||||||||||||||| | |||||||||||||||||  | ||||| |||||||||||    
T  18528392 attgtatatcaagtataaaaatcaaacaatcttttatttgattaagttggtttgtagaagtctctttc--agttgtgattgagcatttg 18528478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 29231537 - 29231423
Alignment:
Q  189 aagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattg 288  Q
    ||||||||||  || |||||||||||||||||| || ||||| |||||||||||| |    ||||| ||| |||||  ||  ||||||| ||||||||||    
T  29231537 aagtgtaaaaccaaacaatcttttatttgattaggtcagattttagaagtctcttgc----ttgtgtttgtgcattgaaacactctttcatgtgtgattg 29231442  T
Q  289 agcattgaaagtctcttga 307  Q
    | |||||||||| ||||||    
T  29231441 aacattgaaagtatcttga 29231423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 289
Target Start/End: Original strand, 28801203 - 28801311
Alignment:
Q  179 attgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaa-gtctctttcttaattgtgcttgagcatttgaagtctctttc 277  Q
    ||||| ||| ||||||||||  || |||||||| |||||||||||||| |||||| || || ||||||  ||||||| |||||||||  ||||||||| |    
T  28801203 attgtatatgaagtgtaaaaccaaacaatcttt-atttgattaagttaaattgtaaaaagtttctttc--aattgtgattgagcattaaaagtctcttgc 28801299  T
Q  278 ttgtgtgattga 289  Q
    ||||||||||||    
T  28801300 ttgtgtgattga 28801311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 294
Target Start/End: Original strand, 10649866 - 10649950
Alignment:
Q  209 ttttatttgattaagttagattgt-agaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||| ||||||||||||||| |||||||||||||  | ||||| ||||||||| |||||||||| ||| |||| || ||||||    
T  10649866 ttttattttattaagttagattgtaagaagtctctttc--agttgtgattgagcattagaagtctcttgcttttgtgcttaagcatt 10649950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 294
Target Start/End: Original strand, 33925896 - 33926013
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgt---agaagtctctttcttaattgtgcttgagcatttgaagtctct 274  Q
    |||||| ||| ||||||||||| || |||||||||||||||||||||| |||| |   |||||||| ||| | | ||||| ||||||| || ||||||||    
T  33925896 gattgtatattaagtgtaaaatcaaacaatcttttatttgattaagttggattttgcgagaagtct-tttttcagttgtgattgagca-ttaaagtctct 33925993  T
Q  275 ttcttgtgtgattgagcatt 294  Q
    | |||||||| || ||||||    
T  33925994 tgcttgtgtgcttaagcatt 33926013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 1210364 - 1210407
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||| |||||||||||||| |||||||| |||||||||    
T  1210364 tgtgcttgagtatttgaagtctcttgcttgtgtgcttgagcatt 1210407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 292
Target Start/End: Original strand, 24498726 - 24498767
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagca 292  Q
    |||||||||||||||||||| |||| |||||||| |||||||    
T  24498726 tgtgcttgagcatttgaagtatcttgcttgtgtgcttgagca 24498767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 15781219 - 15781278
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  15781219 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 15781278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 294
Target Start/End: Original strand, 15791808 - 15791867
Alignment:
Q  232 tagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||| ||||   ||||||||||||| |||| ||||| |||||||| |||||||||    
T  15791808 tagaagtctcttgctta---gtgcttgagcattggaagactcttgcttgtgtgcttgagcatt 15791867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 16206797 - 16206753
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||||||||||||||||||| ||  |||| |||||||||    
T  16206797 ttgtgcttgagcatttgaagtctcttgctgttgtgcttgagcatt 16206753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 17442471 - 17442499
Alignment:
Q  250 ttgtgcttgagcatttgaagtctctttct 278  Q
    |||||||||||||||||||||||||||||    
T  17442471 ttgtgcttgagcatttgaagtctctttct 17442499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 22167521 - 22167573
Alignment:
Q  252 gtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctct 304  Q
    ||||||||||||| |||||||||| |||  ||| |||||||||| ||||||||    
T  22167521 gtgcttgagcattagaagtctcttgctttagtgcttgagcattggaagtctct 22167573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1190 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 306
Target Start/End: Complemental strand, 936 - 841
Alignment:
Q  210 tttatttgattaagttagatt-gtagaagtctctttcttaattgtgcttgagcatttgaagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||||||||||||||||||||  ||||||||||||||  | ||||| |||||||||  |||| |||| |||||||| |||| |||||||||| |||||    
T  936 tttatttgattaagttagattattagaagtctctttc--agttgtgattgagcattataagtatcttgcttgtgtgcttgaacattgaaagtatcttg 841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 135801 - 135732
Alignment:
Q  178 gattgtttatcaagtgtaaaataaaccaatcttttatttgattaagttagattgtagaagtctctttctt 247  Q
    |||||| ||||||||||||||  ||  |||||||||||||||||||||| |||||| |||||||| ||||    
T  135801 gattgtatatcaagtgtaaaactaaataatcttttatttgattaagttaaattgtaaaagtctctctctt 135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Complemental strand, 3811 - 3768
Alignment:
Q  251 tgtgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||    
T  3811 tgtgcttgagtattttaagtctcttgcttgtgtgattgagcatt 3768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 158693 - 158652
Alignment:
Q  266 gaagtctctttcttgtgtgattgagcattgaaagtctcttga 307  Q
    ||||||||||||||||||| |||||||| | |||||||||||    
T  158693 gaagtctctttcttgtgtgcttgagcataggaagtctcttga 158652  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 111907 - 111866
Alignment:
Q  253 tgcttgagcatttgaagtctctttcttgtgtgattgagcatt 294  Q
    |||||||| |||||||||||||| |||||||| |||||||||    
T  111907 tgcttgagtatttgaagtctcttacttgtgtgcttgagcatt 111866  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 16237 - 16181
Alignment:
Q  251 tgtgcttgagcatttg-aagtctctttcttgtgtgattgagcattgaaagtctcttg 306  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||| | ||||||||||    
T  16237 tgtgattgagcatttggaagtctcttttttgtgtgcttgagcataggaagtctcttg 16181  T

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